Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z5R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Z5R entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 17 chains in PDB entry 8Z5R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5GLU 100
A
 PHE 102TYR 104
A
 GLN 106GLN 106
A
 THR 108ASP 110
A
 LEU 112SER 200
A
 VAL 202GLN 239
A
 ILE 241TYR 373
A
 VAL 375LEU 479
A
 HIS 481LEU 547
A
 TYR 549LEU 854
A
 VAL 856LEU 962
A
 GLY 964ASP 1173
A
 MET 1175PRO 1193
A
 GLY 1195HIS 1217
A
 ILE 1219GLN 1223
C
 SER 12ALA 383
D
 GLN 4TYR 100
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 8Z5R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 22Right-handed alpha
Helix 2
AA2
A
23 26Right-handed 310
Helix 3
AA3
A
44 64Right-handed alpha
Helix 4
AA4
A
67 94Right-handed alpha
Helix 5
AA5
A
95 104Right-handed alpha
Helix 6
AA6
A
134 152Right-handed alpha
Helix 7
AA7
A
158 173Right-handed alpha
Helix 8
AA8
A
174 178Right-handed 310
Helix 9
AA9
A
198 212Right-handed alpha
Helix 10
AB1
A
218 222Right-handed 310
Helix 11
AB2
A
223 227Right-handed 310
Helix 12
AB3
A
231 246Right-handed alpha
Helix 13
AB4
A
256 262Right-handed 310
Helix 14
AB5
A
272 287Right-handed alpha
Helix 15
AB6
A
329 342Right-handed alpha
Helix 16
AB7
A
345 359Right-handed alpha
Helix 17
AB8
A
363 365Right-handed 310
Helix 18
AB9
A
380 386Right-handed alpha
Helix 19
AC1
A
400 415Right-handed alpha
Helix 20
AC2
A
419 424Right-handed alpha
Helix 21
AC3
A
428 433Right-handed 310
Helix 22
AC4
A
448 458Right-handed alpha
Helix 23
AC5
A
475 484Right-handed alpha
Helix 24
AC6
A
503 508Right-handed alpha
Helix 25
AC7
A
522 526Right-handed 310
Helix 26
AC8
A
530 534Right-handed 310
Helix 27
AC9
A
535 553Right-handed alpha
Helix 28
AD1
A
567 571Right-handed 310
Helix 29
AD2
A
579 591Right-handed alpha
Helix 30
AD3
A
603 609Right-handed alpha
Helix 31
AD4
A
617 620Right-handed 310
Helix 32
AD5
A
763 773Right-handed alpha
Helix 33
AD6
A
775 790Right-handed alpha
Helix 34
AD7
A
805 821Right-handed alpha
Helix 35
AD8
A
825 834Right-handed alpha
Helix 36
AD9
A
839 849Right-handed alpha
Helix 37
AE1
A
872 885Right-handed alpha
Helix 38
AE2
A
888 908Right-handed alpha
Helix 39
AE3
A
920 936Right-handed alpha
Helix 40
AE4
A
938 949Right-handed alpha
Helix 41
AE5
A
950 964Right-handed alpha
Helix 42
AE6
A
1054 1064Right-handed alpha
Helix 43
AE7
A
1070 1082Right-handed alpha
Helix 44
AE8
A
1095 1100Right-handed alpha
Helix 45
AE9
A
1104 1116Right-handed alpha
Helix 46
AF1
A
1120 1141Right-handed alpha
Helix 47
AF2
A
1151 1170Right-handed alpha
Helix 48
AF3
A
1185 1191Right-handed alpha
Helix 49
AF4
A
1198 1214Right-handed alpha
Helix 50
AF5
C
13 20Right-handed alpha
Helix 51
AF6
C
60 81Right-handed alpha
Helix 52
AF7
C
111 120Right-handed alpha
Helix 53
AF8
C
123 144Right-handed alpha
Helix 54
AF9
C
152 154Right-handed 310
Helix 55
AG1
C
192 199Right-handed alpha
Helix 56
AG2
C
210 226Right-handed alpha
Helix 57
AG3
C
234 245Right-handed alpha
Helix 58
AG4
C
250 255Right-handed alpha
Helix 59
AG5
C
258 269Right-handed alpha
Helix 60
AG6
C
278 284Right-handed alpha
Helix 61
AG7
C
300 320Right-handed alpha
Helix 62
AG8
C
321 325Right-handed 310
Helix 63
AG9
C
329 336Right-handed alpha
Helix 64
AH1
C
340 355Right-handed alpha
Helix 65
AH2
C
366 371Right-handed 310
Helix 66
AH3
C
377 381Right-handed 310
Helix 67
AH4
D
6 21Right-handed alpha
Helix 68
AH5
D
29 41Right-handed alpha
Helix 69
AH6
D
45 57Right-handed alpha
Helix 70
AH7
D
65 74Right-handed alpha
Helix 71
AH8
D
79 94Right-handed alpha
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There are 13 sheets in PDB entry 8Z5R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
115 117anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
292 294anti-parallel
Strand 3
A
327 328anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
367 368anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 374first strand
Strand 2
A
393 395anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 464first strand
Strand 2
A
440 446parallel
Strand 3
A
561 566parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 464first strand
Strand 2
A
440 446parallel
Strand 3
A
599 601parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 474first strand
Strand 2
A
516 520parallel
Strand 3
A
510 513anti-parallel
Strand 4
A
613 615parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 489first strand
Strand 2
A
494 495anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
853 855first strand
Strand 2
A
917 919parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1092 1093first strand
Strand 2
A
1084 1086anti-parallel
Strand 3
A
1148 1150parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 28first strand
Strand 2
C
32 36anti-parallel
Strand 3
C
47 52anti-parallel
Strand 4
C
99 104anti-parallel
Strand 5
C
92 95anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 147first strand
Strand 2
C
173 174anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
156 158first strand
Strand 2
C
164 166anti-parallel
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