Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Z62 entry

There are 2 chains in PDB entry 8Z62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3ARG 412
B
 MET 3ARG 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8Z62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 65Right-handed 310
Helix 2
AA2
A
78 95Right-handed alpha
Helix 3
AA3
A
145 160Right-handed alpha
Helix 4
AA4
A
198 206Right-handed alpha
Helix 5
AA5
A
260 272Right-handed alpha
Helix 6
AA6
A
285 294Right-handed alpha
Helix 7
AA7
A
304 319Right-handed alpha
Helix 8
AA8
A
328 332Right-handed 310
Helix 9
AA9
A
351 360Right-handed alpha
Helix 10
AB1
A
370 381Right-handed alpha
Helix 11
AB2
A
382 384Right-handed 310
Helix 12
AB3
B
61 65Right-handed 310
Helix 13
AB4
B
78 95Right-handed alpha
Helix 14
AB5
B
145 160Right-handed alpha
Helix 15
AB6
B
198 206Right-handed alpha
Helix 16
AB7
B
260 272Right-handed alpha
Helix 17
AB8
B
285 294Right-handed alpha
Helix 18
AB9
B
304 319Right-handed alpha
Helix 19
AC1
B
328 332Right-handed 310
Helix 20
AC2
B
351 360Right-handed alpha
Helix 21
AC3
B
370 381Right-handed alpha
Helix 22
AC4
B
382 384Right-handed 310
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There are 9 sheets in PDB entry 8Z62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
31 40anti-parallel
Strand 3
A
43 53anti-parallel
Strand 4
A
21 23parallel
Strand 5
A
16 18anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
386 394parallel
Strand 3
A
404 411anti-parallel
Strand 4
A
363 368anti-parallel
Strand 5
A
339 342parallel
Strand 6
A
276 280parallel
Strand 7
A
297 302parallel
Strand 8
A
323 326parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
112 118anti-parallel
Strand 3
A
172 179anti-parallel
Strand 4
A
186 192anti-parallel
Strand 5
A
211 216parallel
Strand 6
A
227 233anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 241first strand
Strand 2
A
244 248anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
31 39anti-parallel
Strand 3
B
44 53anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
21 23anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 101first strand
Strand 2
B
386 394parallel
Strand 3
B
404 411anti-parallel
Strand 4
B
363 368anti-parallel
Strand 5
B
339 342parallel
Strand 6
B
276 280parallel
Strand 7
B
297 302parallel
Strand 8
B
323 326parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 124first strand
Strand 2
B
112 118anti-parallel
Strand 3
B
172 179anti-parallel
Strand 4
B
186 192anti-parallel
Strand 5
B
211 216parallel
Strand 6
B
227 233anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 241first strand
Strand 2
B
244 248anti-parallel
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