Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z64

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z64 entry

There are 3 chains in PDB entry 8Z64 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 320	SER 591
C	GLN 14	VAL 308
D	SER 19	TYR 613

There are 38 helices in PDB entry 8Z64. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	337	343	Right-handed alpha
Helix 2	AA2	A	365	371	Right-handed alpha
Helix 3	AA3	A	384	390	Right-handed 310
Helix 4	AA4	A	405	410	Right-handed 310
Helix 5	AA5	A	417	422	Right-handed alpha
Helix 6	AA6	C	294	304	Right-handed alpha
Helix 7	AA7	D	20	52	Right-handed alpha
Helix 8	AA8	D	57	76	Right-handed alpha
Helix 9	AA9	D	90	101	Right-handed alpha
Helix 10	AB1	D	109	130	Right-handed alpha
Helix 11	AB2	D	147	154	Right-handed alpha
Helix 12	AB3	D	157	172	Right-handed alpha
Helix 13	AB4	D	173	175	Right-handed 310
Helix 14	AB5	D	176	194	Right-handed alpha
Helix 15	AB6	D	198	205	Right-handed alpha
Helix 16	AB7	D	206	208	Right-handed 310
Helix 17	AB8	D	220	250	Right-handed alpha
Helix 18	AB9	D	265	267	Right-handed 310
Helix 19	AC1	D	275	277	Right-handed 310
Helix 20	AC2	D	278	283	Right-handed alpha
Helix 21	AC3	D	293	299	Right-handed alpha
Helix 22	AC4	D	303	317	Right-handed alpha
Helix 23	AC5	D	324	331	Right-handed alpha
Helix 24	AC6	D	365	386	Right-handed alpha
Helix 25	AC7	D	387	388	Right-handed 310
Helix 26	AC8	D	389	393	Right-handed 310
Helix 27	AC9	D	399	413	Right-handed alpha
Helix 28	AD1	D	414	422	Right-handed alpha
Helix 29	AD2	D	431	447	Right-handed alpha
Helix 30	AD3	D	448	466	Right-handed alpha
Helix 31	AD4	D	472	484	Right-handed alpha
Helix 32	AD5	D	499	503	Right-handed 310
Helix 33	AD6	D	505	509	Right-handed 310
Helix 34	AD7	D	512	533	Right-handed alpha
Helix 35	AD8	D	547	559	Right-handed alpha
Helix 36	AD9	D	565	574	Right-handed alpha
Helix 37	AE1	D	581	599	Right-handed alpha
Helix 38	AE2	D	600	602	Right-handed 310

There are 9 sheets in PDB entry 8Z64. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	394	403	anti-parallel
Strand 3	A	507	516	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	380	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	551	554	first strand
Strand 2	A	584	588	anti-parallel
Strand 3	A	572	577	anti-parallel
Strand 4	A	565	568	anti-parallel
Strand 5	C	42	43	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	31	first strand
Strand 2	C	60	67	anti-parallel
Strand 3	C	263	269	anti-parallel
Strand 4	C	90	96	anti-parallel
Strand 5	C	188	196	anti-parallel
Strand 6	C	200	209	anti-parallel
Strand 7	C	224	230	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	55	first strand
Strand 2	C	271	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	237	240	anti-parallel
Strand 3	C	103	107	anti-parallel
Strand 4	C	116	121	anti-parallel
Strand 5	C	126	135	anti-parallel
Strand 6	C	160	171	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	144	first strand
Strand 2	C	245	246	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	263	first strand
Strand 2	D	487	488	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	350	first strand
Strand 2	D	356	359	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z64

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z64