Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z77

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z77 entry

There are 3 chains in PDB entry 8Z77 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 50	THR 513
B	LYS 50	THR 513
C	ILE 51	PHE 401

There are 38 helices in PDB entry 8Z77. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	59	Right-handed alpha
Helix 2	AA2	A	68	70	Right-handed 310
Helix 3	AA3	A	90	93	Right-handed 310
Helix 4	AA4	A	122	128	Right-handed 310
Helix 5	AA5	A	160	165	Right-handed alpha
Helix 6	AA6	A	215	219	Right-handed 310
Helix 7	AA7	A	257	264	Right-handed alpha
Helix 8	AA8	A	271	275	Right-handed 310
Helix 9	AA9	A	378	382	Right-handed 310
Helix 10	AB1	A	390	394	Right-handed 310
Helix 11	AB2	A	465	467	Right-handed 310
Helix 12	AB3	A	503	508	Right-handed 310
Helix 13	AB4	B	51	57	Right-handed alpha
Helix 14	AB5	B	68	70	Right-handed 310
Helix 15	AB6	B	90	93	Right-handed 310
Helix 16	AB7	B	122	128	Right-handed 310
Helix 17	AB8	B	160	165	Right-handed alpha
Helix 18	AB9	B	215	219	Right-handed 310
Helix 19	AC1	B	235	239	Right-handed 310
Helix 20	AC2	B	258	262	Right-handed 310
Helix 21	AC3	B	271	275	Right-handed 310
Helix 22	AC4	B	378	382	Right-handed 310
Helix 23	AC5	B	390	394	Right-handed 310
Helix 24	AC6	B	465	467	Right-handed 310
Helix 25	AC7	B	502	508	Right-handed 310
Helix 26	AC8	C	52	57	Right-handed alpha
Helix 27	AC9	C	68	70	Right-handed 310
Helix 28	AD1	C	90	93	Right-handed 310
Helix 29	AD2	C	122	128	Right-handed 310
Helix 30	AD3	C	160	165	Right-handed alpha
Helix 31	AD4	C	215	219	Right-handed 310
Helix 32	AD5	C	235	239	Right-handed 310
Helix 33	AD6	C	258	264	Right-handed alpha
Helix 34	AD7	C	271	275	Right-handed 310
Helix 35	AD8	C	378	382	Right-handed 310
Helix 36	AD9	C	390	394	Right-handed 310
Helix 37	AE1	C	465	467	Right-handed 310
Helix 38	AE2	C	503	508	Right-handed 310

There are 21 sheets in PDB entry 8Z77. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	88	first strand
Strand 2	A	72	77	anti-parallel
Strand 3	A	62	66	anti-parallel
Strand 4	A	496	497	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	104	first strand
Strand 2	A	114	121	anti-parallel
Strand 3	A	144	149	anti-parallel
Strand 4	A	154	159	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	174	first strand
Strand 2	A	180	185	anti-parallel
Strand 3	A	190	195	anti-parallel
Strand 4	A	200	211	anti-parallel
Strand 5	A	224	230	anti-parallel
Strand 6	A	333	338	anti-parallel
Strand 7	A	327	330	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	283	first strand
Strand 2	A	289	294	anti-parallel
Strand 3	A	299	304	anti-parallel
Strand 4	A	309	315	anti-parallel
Strand 5	A	323	325	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	350	first strand
Strand 2	A	356	361	anti-parallel
Strand 3	A	367	372	anti-parallel
Strand 4	A	383	388	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	405	first strand
Strand 2	A	411	417	anti-parallel
Strand 3	A	424	430	anti-parallel
Strand 4	A	435	443	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	446	451	first strand
Strand 2	A	457	463	anti-parallel
Strand 3	A	470	476	anti-parallel
Strand 4	A	481	487	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	88	first strand
Strand 2	B	72	77	anti-parallel
Strand 3	B	62	66	anti-parallel
Strand 4	B	496	497	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	104	first strand
Strand 2	B	114	121	anti-parallel
Strand 3	B	144	149	anti-parallel
Strand 4	B	154	159	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	174	first strand
Strand 2	B	180	185	anti-parallel
Strand 3	B	190	195	anti-parallel
Strand 4	B	200	211	anti-parallel
Strand 5	B	224	230	anti-parallel
Strand 6	B	333	338	anti-parallel
Strand 7	B	327	330	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	283	first strand
Strand 2	B	289	294	anti-parallel
Strand 3	B	299	304	anti-parallel
Strand 4	B	309	315	anti-parallel
Strand 5	B	323	324	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	350	first strand
Strand 2	B	356	361	anti-parallel
Strand 3	B	367	372	anti-parallel
Strand 4	B	383	388	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	405	first strand
Strand 2	B	411	417	anti-parallel
Strand 3	B	424	430	anti-parallel
Strand 4	B	435	443	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	451	first strand
Strand 2	B	457	463	anti-parallel
Strand 3	B	470	476	anti-parallel
Strand 4	B	481	486	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	88	first strand
Strand 2	C	72	77	anti-parallel
Strand 3	C	62	66	anti-parallel
Strand 4	C	496	497	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	104	first strand
Strand 2	C	114	121	anti-parallel
Strand 3	C	144	149	anti-parallel
Strand 4	C	154	159	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	174	first strand
Strand 2	C	180	185	anti-parallel
Strand 3	C	190	195	anti-parallel
Strand 4	C	200	211	anti-parallel
Strand 5	C	224	230	anti-parallel
Strand 6	C	333	338	anti-parallel
Strand 7	C	327	330	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	283	first strand
Strand 2	C	289	294	anti-parallel
Strand 3	C	299	304	anti-parallel
Strand 4	C	309	315	anti-parallel
Strand 5	C	323	324	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	350	first strand
Strand 2	C	356	361	anti-parallel
Strand 3	C	367	372	anti-parallel
Strand 4	C	383	388	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	405	first strand
Strand 2	C	411	417	anti-parallel
Strand 3	C	424	430	anti-parallel
Strand 4	C	435	443	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	446	451	first strand
Strand 2	C	457	463	anti-parallel
Strand 3	C	470	476	anti-parallel
Strand 4	C	481	486	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z77

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z77