Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z7J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z7J entry

There are 6 chains in PDB entry 8Z7J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 3	PHE 354
B	SER 2	ASN 340
C	SER 34	GLU 94
R	CYS 19	THR 321
S	ASP 1	LYS 248
N	GLN 1	SER 130

There are 32 helices in PDB entry 8Z7J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	32	Right-handed alpha
Helix 2	AA2	A	45	55	Right-handed alpha
Helix 3	AA3	A	207	216	Right-handed 310
Helix 4	AA4	A	226	231	Right-handed 310
Helix 5	AA5	A	241	255	Right-handed alpha
Helix 6	AA6	A	256	260	Right-handed 310
Helix 7	AA7	A	270	281	Right-handed alpha
Helix 8	AA8	A	282	286	Right-handed 310
Helix 9	AA9	A	295	309	Right-handed alpha
Helix 10	AB1	A	330	351	Right-handed alpha
Helix 11	AB2	B	3	26	Right-handed alpha
Helix 12	AB3	B	29	35	Right-handed alpha
Helix 13	AB4	C	35	55	Right-handed alpha
Helix 14	AB5	C	60	76	Right-handed alpha
Helix 15	AB6	R	24	28	Right-handed 310
Helix 16	AB7	R	29	61	Right-handed alpha
Helix 17	AB8	R	64	81	Right-handed alpha
Helix 18	AB9	R	81	91	Right-handed alpha
Helix 19	AC1	R	98	132	Right-handed alpha
Helix 20	AC2	R	136	145	Right-handed alpha
Helix 21	AC3	R	146	168	Right-handed alpha
Helix 22	AC4	R	193	210	Right-handed alpha
Helix 23	AC5	R	210	232	Right-handed alpha
Helix 24	AC6	R	236	275	Right-handed alpha
Helix 25	AC7	R	280	310	Right-handed alpha
Helix 26	AC8	R	313	321	Right-handed alpha
Helix 27	AC9	S	28	32	Right-handed 310
Helix 28	AD1	S	74	76	Right-handed 310
Helix 29	AD2	S	87	91	Right-handed 310
Helix 30	AD3	S	220	224	Right-handed 310
Helix 31	AD4	N	86	90	Right-handed 310
Helix 32	AD5	N	111	115	Right-handed 310

There are 15 sheets in PDB entry 8Z7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	190	first strand
Strand 2	A	195	200	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	220	225	parallel
Strand 5	A	263	268	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	168	170	anti-parallel
Strand 4	B	175	178	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	217	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	4	7	first strand
Strand 2	S	18	24	anti-parallel
Strand 3	S	78	83	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	93	99	anti-parallel
Strand 4	S	33	39	anti-parallel
Strand 5	S	45	51	anti-parallel
Strand 6	S	58	60	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	146	149	first strand
Strand 2	S	243	247	parallel
Strand 3	S	226	231	anti-parallel
Strand 4	S	174	179	anti-parallel
Strand 5	S	185	190	anti-parallel
Strand 6	S	194	195	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	155	160	first strand
Strand 2	S	211	216	anti-parallel
Strand 3	S	203	204	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	77	83	anti-parallel
Strand 4	N	69	72	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	58	59	first strand
Strand 2	N	47	50	anti-parallel
Strand 3	N	32	37	anti-parallel
Strand 4	N	91	99	anti-parallel
Strand 5	N	119	120	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	58	59	first strand
Strand 2	N	47	50	anti-parallel
Strand 3	N	32	37	anti-parallel
Strand 4	N	91	99	anti-parallel
Strand 5	N	124	126	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z7J

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z7J