Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z7M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Z7M entry

There are 2 chains in PDB entry 8Z7M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 39ARG 267
B
 ASP 40GLU 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8Z7M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
91 106Right-handed alpha
Helix 2
AA2
A
119 124Right-handed alpha
Helix 3
AA3
A
125 132Right-handed alpha
Helix 4
AA4
A
140 146Right-handed alpha
Helix 5
AA5
A
147 150Right-handed 310
Helix 6
AA6
A
225 237Right-handed alpha
Helix 7
AA7
A
253 269Right-handed alpha
Helix 8
AA8
B
91 106Right-handed alpha
Helix 9
AA9
B
119 124Right-handed alpha
Helix 10
AB1
B
125 131Right-handed alpha
Helix 11
AB2
B
140 146Right-handed alpha
Helix 12
AB3
B
147 150Right-handed 310
Helix 13
AB4
B
224 237Right-handed alpha
Helix 14
AB5
B
253 269Right-handed alpha
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There are 4 sheets in PDB entry 8Z7M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
46 52anti-parallel
Strand 3
A
55 64anti-parallel
Strand 4
A
68 79anti-parallel
Strand 5
A
82 85anti-parallel
Strand 6
A
110 114parallel
Strand 7
A
136 139parallel
Strand 8
A
156 158parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
192 195anti-parallel
Strand 3
A
200 202anti-parallel
Strand 4
A
242 244parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 43first strand
Strand 2
B
46 52anti-parallel
Strand 3
B
55 64anti-parallel
Strand 4
B
68 78anti-parallel
Strand 5
B
83 85anti-parallel
Strand 6
B
110 115parallel
Strand 7
B
136 139parallel
Strand 8
B
156 158parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 180first strand
Strand 2
B
192 195anti-parallel
Strand 3
B
200 204anti-parallel
Strand 4
B
242 245parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il