Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z83

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z83 entry

There are 36 chains in PDB entry 8Z83 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	CYS 26	ASP 358
L	ALA 2	GLY 275
M	ALA 2	ALA 319
H	MET 1	LEU 278
A	MET 1	VAL 46
B	SER 6	TYR 53
D	MET 1	TYR 46
E	ASN 9	PHE 53
F	MET 1	VAL 46
G	LEU 7	TYR 53
I	MET 1	TYR 46
J	ASN 9	PHE 53
K	MET 1	VAL 46
N	LEU 7	TYR 53
O	MET 1	TYR 46
P	ASN 9	PHE 53
Q	MET 1	VAL 46
R	LEU 7	TYR 53
S	MET 1	TYR 46
T	ASN 9	PHE 53
U	MET 1	VAL 46
V	LEU 7	TYR 53
W	MET 1	TYR 46
X	ASN 9	PHE 53
Y	MET 1	VAL 46
Z	SER 6	TYR 53
1	MET 1	TYR 46
2	ASN 9	PHE 53
3	MET 1	VAL 46
4	LEU 7	TYR 53
5	MET 1	TYR 46
6	ASN 9	PHE 53
7	MET 1	VAL 46
8	LEU 7	TYR 53
9	MET 1	TYR 46
0	ASN 9	PHE 53

There are106 helices in PDB entry 8Z83. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	72	77	Right-handed alpha
Helix 2	AA2	C	87	103	Right-handed alpha
Helix 3	AA3	C	106	111	Right-handed 310
Helix 4	AA4	C	122	142	Right-handed alpha
Helix 5	AA5	C	142	147	Right-handed alpha
Helix 6	AA6	C	152	158	Right-handed alpha
Helix 7	AA7	C	201	207	Right-handed alpha
Helix 8	AA8	C	230	248	Right-handed alpha
Helix 9	AA9	C	251	256	Right-handed alpha
Helix 10	AB1	C	257	261	Right-handed 310
Helix 11	AB2	C	268	288	Right-handed alpha
Helix 12	AB3	C	289	293	Right-handed 310
Helix 13	AB4	C	312	317	Right-handed alpha
Helix 14	AB5	C	321	326	Right-handed 310
Helix 15	AB6	L	7	11	Right-handed 310
Helix 16	AB7	L	19	23	Right-handed 310
Helix 17	AB8	L	32	58	Right-handed alpha
Helix 18	AB9	L	70	74	Right-handed 310
Helix 19	AC1	L	79	82	Right-handed 310
Helix 20	AC2	L	83	111	Right-handed alpha
Helix 21	AC3	L	115	133	Right-handed alpha
Helix 22	AC4	L	133	140	Right-handed alpha
Helix 23	AC5	L	141	145	Right-handed 310
Helix 24	AC6	L	151	163	Right-handed alpha
Helix 25	AC7	L	164	165	Right-handed 310
Helix 26	AC8	L	166	169	Right-handed 310
Helix 27	AC9	L	170	199	Right-handed alpha
Helix 28	AD1	L	208	220	Right-handed alpha
Helix 29	AD2	L	224	250	Right-handed alpha
Helix 30	AD3	L	258	263	Right-handed alpha
Helix 31	AD4	L	263	268	Right-handed alpha
Helix 32	AD5	L	269	273	Right-handed 310
Helix 33	AD6	M	37	44	Right-handed alpha
Helix 34	AD7	M	54	79	Right-handed alpha
Helix 35	AD8	M	82	89	Right-handed alpha
Helix 36	AD9	M	99	103	Right-handed 310
Helix 37	AE1	M	108	111	Right-handed 310
Helix 38	AE2	M	112	140	Right-handed alpha
Helix 39	AE3	M	144	162	Right-handed alpha
Helix 40	AE4	M	162	169	Right-handed alpha
Helix 41	AE5	M	170	174	Right-handed 310
Helix 42	AE6	M	179	193	Right-handed alpha
Helix 43	AE7	M	195	198	Right-handed 310
Helix 44	AE8	M	199	226	Right-handed alpha
Helix 45	AE9	M	227	230	Right-handed 310
Helix 46	AF1	M	233	240	Right-handed alpha
Helix 47	AF2	M	242	257	Right-handed alpha
Helix 48	AF3	M	263	287	Right-handed alpha
Helix 49	AF4	M	293	301	Right-handed alpha
Helix 50	AF5	H	12	36	Right-handed alpha
Helix 51	AF6	H	46	50	Right-handed 310
Helix 52	AF7	H	82	90	Right-handed alpha
Helix 53	AF8	H	112	117	Right-handed alpha
Helix 54	AF9	H	118	122	Right-handed 310
Helix 55	AG1	H	154	161	Right-handed alpha
Helix 56	AG2	H	218	220	Right-handed 310
Helix 57	AG3	H	235	241	Right-handed 310
Helix 58	AG4	H	251	269	Right-handed alpha
Helix 59	AG5	A	1	7	Right-handed 310
Helix 60	AG6	A	9	35	Right-handed alpha
Helix 61	AG7	B	11	44	Right-handed alpha
Helix 62	AG8	D	3	8	Right-handed alpha
Helix 63	AG9	D	9	35	Right-handed alpha
Helix 64	AH1	E	11	44	Right-handed alpha
Helix 65	AH2	F	3	8	Right-handed alpha
Helix 66	AH3	F	9	35	Right-handed alpha
Helix 67	AH4	G	11	44	Right-handed alpha
Helix 68	AH5	I	3	8	Right-handed alpha
Helix 69	AH6	I	9	35	Right-handed alpha
Helix 70	AH7	J	11	44	Right-handed alpha
Helix 71	AH8	K	3	8	Right-handed alpha
Helix 72	AH9	K	9	35	Right-handed alpha
Helix 73	AI1	N	11	44	Right-handed alpha
Helix 74	AI2	O	1	7	Right-handed 310
Helix 75	AI3	O	9	34	Right-handed alpha
Helix 76	AI4	P	11	44	Right-handed alpha
Helix 77	AI5	Q	3	8	Right-handed alpha
Helix 78	AI6	Q	9	35	Right-handed alpha
Helix 79	AI7	R	11	44	Right-handed alpha
Helix 80	AI8	S	2	7	Right-handed 310
Helix 81	AI9	S	9	34	Right-handed alpha
Helix 82	AJ1	T	11	44	Right-handed alpha
Helix 83	AJ2	U	3	8	Right-handed alpha
Helix 84	AJ3	U	9	35	Right-handed alpha
Helix 85	AJ4	V	11	44	Right-handed alpha
Helix 86	AJ5	W	1	7	Right-handed 310
Helix 87	AJ6	W	9	35	Right-handed alpha
Helix 88	AJ7	X	11	44	Right-handed alpha
Helix 89	AJ8	Y	3	8	Right-handed alpha
Helix 90	AJ9	Y	9	35	Right-handed alpha
Helix 91	AK1	Z	11	44	Right-handed alpha
Helix 92	AK2	1	1	7	Right-handed 310
Helix 93	AK3	1	9	35	Right-handed alpha
Helix 94	AK4	2	11	44	Right-handed alpha
Helix 95	AK5	3	3	8	Right-handed alpha
Helix 96	AK6	3	9	35	Right-handed alpha
Helix 97	AK7	4	11	44	Right-handed alpha
Helix 98	AK8	5	3	8	Right-handed alpha
Helix 99	AK9	5	9	35	Right-handed alpha
Helix 100	AL1	6	11	44	Right-handed alpha
Helix 101	AL2	7	1	7	Right-handed 310
Helix 102	AL3	7	9	35	Right-handed alpha
Helix 103	AL4	8	11	44	Right-handed alpha
Helix 104	AL5	9	3	8	Right-handed alpha
Helix 105	AL6	9	9	35	Right-handed alpha
Helix 106	AL7	0	11	44	Right-handed alpha

There are 11 sheets in PDB entry 8Z83. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	44	47	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	167	first strand
Strand 2	C	309	310	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	26	27	first strand
Strand 2	L	30	31	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	13	14	first strand
Strand 2	H	150	151	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	35	36	first strand
Strand 2	M	47	48	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	94	95	first strand
Strand 2	M	177	178	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	45	first strand
Strand 2	H	56	58	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	68	71	first strand
Strand 2	H	77	80	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	96	98	first strand
Strand 2	H	107	109	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	140	142	first strand
Strand 2	H	180	190	anti-parallel
Strand 3	H	195	202	anti-parallel
Strand 4	H	212	216	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	140	142	first strand
Strand 2	H	180	190	anti-parallel
Strand 3	H	172	174	anti-parallel
Strand 4	H	227	229	parallel
Strand 5	H	221	222	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z83

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z83