Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z85

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z85 entry

There are 5 chains in PDB entry 8Z85 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	TYR 622
B	MET 1	ARG 636
C	ALA 52	THR 136
D	A 1	G 13
E	U 13	U 17

There are 54 helices in PDB entry 8Z85. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	16	Right-handed alpha
Helix 2	AA2	A	27	46	Right-handed alpha
Helix 3	AA3	A	103	107	Right-handed 310
Helix 4	AA4	A	126	133	Right-handed alpha
Helix 5	AA5	A	134	155	Right-handed alpha
Helix 6	AA6	A	157	166	Right-handed alpha
Helix 7	AA7	A	176	184	Right-handed alpha
Helix 8	AA8	A	233	235	Right-handed 310
Helix 9	AA9	A	246	257	Right-handed alpha
Helix 10	AB1	A	270	272	Right-handed 310
Helix 11	AB2	A	273	286	Right-handed alpha
Helix 12	AB3	A	296	302	Right-handed alpha
Helix 13	AB4	A	304	316	Right-handed alpha
Helix 14	AB5	A	335	345	Right-handed alpha
Helix 15	AB6	A	362	381	Right-handed alpha
Helix 16	AB7	A	382	401	Right-handed alpha
Helix 17	AB8	A	485	492	Right-handed alpha
Helix 18	AB9	A	493	497	Right-handed 310
Helix 19	AC1	A	498	517	Right-handed alpha
Helix 20	AC2	A	540	557	Right-handed alpha
Helix 21	AC3	A	559	581	Right-handed alpha
Helix 22	AC4	A	592	599	Right-handed alpha
Helix 23	AC5	A	604	617	Right-handed alpha
Helix 24	AC6	B	1	5	Right-handed 310
Helix 25	AC7	B	13	20	Right-handed 310
Helix 26	AC8	B	33	47	Right-handed alpha
Helix 27	AC9	B	53	58	Right-handed alpha
Helix 28	AD1	B	66	70	Right-handed 310
Helix 29	AD2	B	80	94	Right-handed alpha
Helix 30	AD3	B	95	108	Right-handed alpha
Helix 31	AD4	B	108	113	Right-handed alpha
Helix 32	AD5	B	114	121	Right-handed 310
Helix 33	AD6	B	134	151	Right-handed alpha
Helix 34	AD7	B	157	169	Right-handed alpha
Helix 35	AD8	B	216	224	Right-handed alpha
Helix 36	AD9	B	247	266	Right-handed alpha
Helix 37	AE1	B	279	287	Right-handed alpha
Helix 38	AE2	B	310	326	Right-handed alpha
Helix 39	AE3	B	328	344	Right-handed alpha
Helix 40	AE4	B	373	378	Right-handed 310
Helix 41	AE5	B	396	409	Right-handed alpha
Helix 42	AE6	B	432	449	Right-handed alpha
Helix 43	AE7	B	456	459	Right-handed 310
Helix 44	AE8	B	496	514	Right-handed alpha
Helix 45	AE9	B	518	537	Right-handed alpha
Helix 46	AF1	B	543	552	Right-handed alpha
Helix 47	AF2	B	558	562	Right-handed 310
Helix 48	AF3	B	575	583	Right-handed alpha
Helix 49	AF4	B	587	595	Right-handed alpha
Helix 50	AF5	C	52	55	Right-handed 310
Helix 51	AF6	C	56	62	Right-handed alpha
Helix 52	AF7	C	102	111	Right-handed alpha
Helix 53	AF8	C	115	123	Right-handed alpha
Helix 54	AF9	C	124	136	Right-handed alpha

There are 12 sheets in PDB entry 8Z85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	95	100	anti-parallel
Strand 3	A	115	119	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	585	587	anti-parallel
Strand 3	B	460	462	anti-parallel
Strand 4	B	294	303	anti-parallel
Strand 5	B	423	430	anti-parallel
Strand 6	B	416	419	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	585	587	anti-parallel
Strand 3	B	460	462	anti-parallel
Strand 4	B	294	303	anti-parallel
Strand 5	B	453	454	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	238	first strand
Strand 2	A	442	451	anti-parallel
Strand 3	A	423	431	anti-parallel
Strand 4	A	472	484	first strand
Strand 5	A	463	469	anti-parallel
Strand 6	A	258	264	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	423	431	anti-parallel
Strand 3	A	442	451	anti-parallel
Strand 4	A	409	417	first strand
Strand 5	A	290	291	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	323	first strand
Strand 2	B	353	356	anti-parallel
Strand 3	B	361	364	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	531	first strand
Strand 2	A	534	539	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	132	133	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	175	first strand
Strand 2	B	213	215	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	245	first strand
Strand 2	B	225	230	anti-parallel
Strand 3	B	346	348	parallel
Strand 4	B	384	386	anti-parallel
Strand 5	B	380	381	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	469	first strand
Strand 2	B	473	476	anti-parallel
Strand 3	B	479	482	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	633	634	first strand
Strand 2	C	67	68	anti-parallel
Strand 3	C	98	99	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z85

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z85