Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z8J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z8J entry

There are 2 chains in PDB entry 8Z8J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	TYR 622
B	MET 1	LYS 703

There are 72 helices in PDB entry 8Z8J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	18	Right-handed alpha
Helix 2	AA2	A	30	46	Right-handed alpha
Helix 3	AA3	A	64	75	Right-handed alpha
Helix 4	AA4	A	126	133	Right-handed alpha
Helix 5	AA5	A	134	155	Right-handed alpha
Helix 6	AA6	A	157	167	Right-handed alpha
Helix 7	AA7	A	176	184	Right-handed alpha
Helix 8	AA8	A	185	187	Right-handed 310
Helix 9	AA9	A	233	237	Right-handed 310
Helix 10	AB1	A	246	257	Right-handed alpha
Helix 11	AB2	A	270	272	Right-handed 310
Helix 12	AB3	A	273	287	Right-handed alpha
Helix 13	AB4	A	294	298	Right-handed 310
Helix 14	AB5	A	304	317	Right-handed alpha
Helix 15	AB6	A	335	345	Right-handed alpha
Helix 16	AB7	A	362	381	Right-handed alpha
Helix 17	AB8	A	382	401	Right-handed alpha
Helix 18	AB9	A	485	492	Right-handed alpha
Helix 19	AC1	A	493	497	Right-handed 310
Helix 20	AC2	A	498	516	Right-handed alpha
Helix 21	AC3	A	540	557	Right-handed alpha
Helix 22	AC4	A	559	581	Right-handed alpha
Helix 23	AC5	A	592	599	Right-handed alpha
Helix 24	AC6	A	604	615	Right-handed alpha
Helix 25	AC7	B	15	20	Right-handed 310
Helix 26	AC8	B	33	47	Right-handed alpha
Helix 27	AC9	B	53	58	Right-handed alpha
Helix 28	AD1	B	66	70	Right-handed 310
Helix 29	AD2	B	80	94	Right-handed alpha
Helix 30	AD3	B	96	108	Right-handed alpha
Helix 31	AD4	B	114	120	Right-handed 310
Helix 32	AD5	B	134	151	Right-handed alpha
Helix 33	AD6	B	157	169	Right-handed alpha
Helix 34	AD7	B	216	224	Right-handed alpha
Helix 35	AD8	B	247	266	Right-handed alpha
Helix 36	AD9	B	273	277	Right-handed 310
Helix 37	AE1	B	278	287	Right-handed alpha
Helix 38	AE2	B	304	308	Right-handed 310
Helix 39	AE3	B	310	325	Right-handed alpha
Helix 40	AE4	B	328	335	Right-handed alpha
Helix 41	AE5	B	336	343	Right-handed alpha
Helix 42	AE6	B	396	406	Right-handed alpha
Helix 43	AE7	B	407	409	Right-handed 310
Helix 44	AE8	B	432	449	Right-handed alpha
Helix 45	AE9	B	496	514	Right-handed alpha
Helix 46	AF1	B	518	537	Right-handed alpha
Helix 47	AF2	B	543	552	Right-handed alpha
Helix 48	AF3	B	558	562	Right-handed 310
Helix 49	AF4	B	575	583	Right-handed alpha
Helix 50	AF5	B	588	595	Right-handed alpha
Helix 51	AF6	B	646	666	Right-handed alpha
Helix 52	AF7	B	667	671	Right-handed 310
Helix 53	AF8	B	679	694	Right-handed alpha
Helix 54	AF9	B	698	709	Right-handed alpha
Helix 55	AG1	C	11	27	Right-handed alpha
Helix 56	AG2	C	27	32	Right-handed alpha
Helix 57	AG3	C	34	36	Right-handed 310
Helix 58	AG4	C	37	42	Right-handed alpha
Helix 59	AG5	C	54	56	Right-handed 310
Helix 60	AG6	C	57	62	Right-handed alpha
Helix 61	AG7	C	102	107	Right-handed alpha
Helix 62	AG8	C	115	123	Right-handed alpha
Helix 63	AG9	C	124	134	Right-handed alpha
Helix 64	AH1	C	166	176	Right-handed alpha
Helix 65	AH2	C	181	187	Right-handed alpha
Helix 66	AH3	C	191	207	Right-handed alpha
Helix 67	AH4	C	208	221	Right-handed alpha
Helix 68	AH5	C	234	240	Right-handed alpha
Helix 69	AH6	C	404	415	Right-handed alpha
Helix 70	AH7	C	417	421	Right-handed 310
Helix 71	AH8	C	431	446	Right-handed alpha
Helix 72	AH9	C	447	455	Right-handed alpha

There are 16 sheets in PDB entry 8Z8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	54	55	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	87	89	anti-parallel
Strand 3	A	94	100	anti-parallel
Strand 4	A	115	119	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	585	587	anti-parallel
Strand 3	B	460	462	anti-parallel
Strand 4	B	297	301	anti-parallel
Strand 5	B	423	427	anti-parallel
Strand 6	B	416	419	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	423	431	anti-parallel
Strand 3	A	442	449	anti-parallel
Strand 4	A	472	484	anti-parallel
Strand 5	A	464	469	anti-parallel
Strand 6	A	260	264	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	423	431	anti-parallel
Strand 3	A	409	417	anti-parallel
Strand 4	A	290	291	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	323	first strand
Strand 2	B	353	356	anti-parallel
Strand 3	B	361	364	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	531	first strand
Strand 2	A	534	539	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	126	first strand
Strand 2	B	131	133	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	175	first strand
Strand 2	B	213	215	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	245	first strand
Strand 2	B	225	230	anti-parallel
Strand 3	B	346	348	parallel
Strand 4	B	384	386	anti-parallel
Strand 5	B	380	381	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	470	first strand
Strand 2	B	473	476	anti-parallel
Strand 3	B	479	482	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	143	first strand
Strand 2	C	249	250	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	154	first strand
Strand 2	C	224	227	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	354	first strand
Strand 2	C	357	362	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	376	first strand
Strand 2	C	379	385	anti-parallel
Strand 3	C	390	394	anti-parallel
Strand 4	C	481	482	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	457	first strand
Strand 2	C	477	478	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z8J

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z8J