Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Z8P entry

There are 4 chains in PDB entry 8Z8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4TYR 239
B
 GLY -2TYR 239
C
 GLY -2TYR 239
D
 GLY -2TYR 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 8Z8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 30Right-handed alpha
Helix 2
AA2
A
31 34Right-handed 310
Helix 3
AA3
A
35 47Right-handed alpha
Helix 4
AA4
A
50 54Right-handed 310
Helix 5
AA5
A
56 70Right-handed alpha
Helix 6
AA6
A
83 93Right-handed alpha
Helix 7
AA7
A
105 119Right-handed alpha
Helix 8
AA8
A
121 123Right-handed 310
Helix 9
AA9
A
131 143Right-handed alpha
Helix 10
AB1
A
144 148Right-handed 310
Helix 11
AB2
A
157 159Right-handed 310
Helix 12
AB3
A
160 171Right-handed alpha
Helix 13
AB4
A
184 191Right-handed 310
Helix 14
AB5
A
198 218Right-handed alpha
Helix 15
AB6
B
4 8Right-handed 310
Helix 16
AB7
B
18 30Right-handed alpha
Helix 17
AB8
B
31 34Right-handed 310
Helix 18
AB9
B
35 47Right-handed alpha
Helix 19
AC1
B
50 54Right-handed 310
Helix 20
AC2
B
56 70Right-handed alpha
Helix 21
AC3
B
83 93Right-handed alpha
Helix 22
AC4
B
105 119Right-handed alpha
Helix 23
AC5
B
121 123Right-handed 310
Helix 24
AC6
B
131 143Right-handed alpha
Helix 25
AC7
B
144 148Right-handed 310
Helix 26
AC8
B
157 159Right-handed 310
Helix 27
AC9
B
160 171Right-handed alpha
Helix 28
AD1
B
184 191Right-handed 310
Helix 29
AD2
B
198 218Right-handed alpha
Helix 30
AD3
C
4 8Right-handed 310
Helix 31
AD4
C
18 30Right-handed alpha
Helix 32
AD5
C
31 34Right-handed 310
Helix 33
AD6
C
35 47Right-handed alpha
Helix 34
AD7
C
50 54Right-handed 310
Helix 35
AD8
C
56 70Right-handed alpha
Helix 36
AD9
C
83 93Right-handed alpha
Helix 37
AE1
C
105 119Right-handed alpha
Helix 38
AE2
C
121 123Right-handed 310
Helix 39
AE3
C
131 143Right-handed alpha
Helix 40
AE4
C
144 148Right-handed 310
Helix 41
AE5
C
160 171Right-handed alpha
Helix 42
AE6
C
184 191Right-handed 310
Helix 43
AE7
C
198 218Right-handed alpha
Helix 44
AE8
D
4 8Right-handed 310
Helix 45
AE9
D
18 30Right-handed alpha
Helix 46
AF1
D
31 34Right-handed 310
Helix 47
AF2
D
35 47Right-handed alpha
Helix 48
AF3
D
50 54Right-handed 310
Helix 49
AF4
D
56 70Right-handed alpha
Helix 50
AF5
D
83 93Right-handed alpha
Helix 51
AF6
D
105 119Right-handed alpha
Helix 52
AF7
D
121 123Right-handed 310
Helix 53
AF8
D
131 143Right-handed alpha
Helix 54
AF9
D
144 148Right-handed 310
Helix 55
AG1
D
157 159Right-handed 310
Helix 56
AG2
D
160 171Right-handed alpha
Helix 57
AG3
D
184 191Right-handed 310
Helix 58
AG4
D
198 218Right-handed alpha
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There are 4 sheets in PDB entry 8Z8P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
98 103parallel
Strand 3
A
74 78parallel
Strand 4
A
149 154parallel
Strand 5
A
172 181parallel
Strand 6
A
232 237anti-parallel
Strand 7
A
221 226anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 129first strand
Strand 2
B
98 103parallel
Strand 3
B
74 78parallel
Strand 4
B
149 154parallel
Strand 5
B
172 181parallel
Strand 6
B
232 237anti-parallel
Strand 7
B
221 226anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 129first strand
Strand 2
C
98 103parallel
Strand 3
C
74 78parallel
Strand 4
C
149 154parallel
Strand 5
C
172 181parallel
Strand 6
C
232 237anti-parallel
Strand 7
C
221 226anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
125 129first strand
Strand 2
D
98 103parallel
Strand 3
D
74 78parallel
Strand 4
D
149 154parallel
Strand 5
D
172 181parallel
Strand 6
D
232 237anti-parallel
Strand 7
D
221 226anti-parallel
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