Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z8Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z8Y entry

There are 2 chains in PDB entry 8Z8Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 507
B	MET 1	LEU 446

There are 40 helices in PDB entry 8Z8Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	17	Right-handed 310
Helix 2	AA2	A	22	31	Right-handed alpha
Helix 3	AA3	A	46	62	Right-handed alpha
Helix 4	AA4	A	77	83	Right-handed alpha
Helix 5	AA5	A	97	106	Right-handed alpha
Helix 6	AA6	A	109	132	Right-handed alpha
Helix 7	AA7	A	144	151	Right-handed alpha
Helix 8	AA8	A	158	162	Right-handed 310
Helix 9	AA9	A	169	174	Right-handed alpha
Helix 10	AB1	A	183	199	Right-handed alpha
Helix 11	AB2	A	205	215	Right-handed alpha
Helix 12	AB3	A	216	218	Right-handed 310
Helix 13	AB4	A	226	230	Right-handed alpha
Helix 14	AB5	A	248	265	Right-handed alpha
Helix 15	AB6	A	331	351	Right-handed alpha
Helix 16	AB7	A	366	375	Right-handed alpha
Helix 17	AB8	A	451	465	Right-handed alpha
Helix 18	AB9	A	477	482	Right-handed alpha
Helix 19	AC1	A	482	493	Right-handed alpha
Helix 20	AC2	A	504	507	Right-handed 310
Helix 21	AC3	B	14	29	Right-handed alpha
Helix 22	AC4	B	34	38	Right-handed 310
Helix 23	AC5	B	45	56	Right-handed alpha
Helix 24	AC6	B	65	71	Right-handed alpha
Helix 25	AC7	B	71	89	Right-handed alpha
Helix 26	AC8	B	90	92	Right-handed 310
Helix 27	AC9	B	109	115	Right-handed alpha
Helix 28	AD1	B	123	139	Right-handed alpha
Helix 29	AD2	B	147	158	Right-handed alpha
Helix 30	AD3	B	190	194	Right-handed 310
Helix 31	AD4	B	199	203	Right-handed 310
Helix 32	AD5	B	219	223	Right-handed 310
Helix 33	AD6	B	234	238	Right-handed 310
Helix 34	AD7	B	243	248	Right-handed alpha
Helix 35	AD8	B	257	280	Right-handed alpha
Helix 36	AD9	B	300	302	Right-handed 310
Helix 37	AE1	B	353	367	Right-handed alpha
Helix 38	AE2	B	369	378	Right-handed alpha
Helix 39	AE3	B	378	384	Right-handed alpha
Helix 40	AE4	B	421	429	Right-handed alpha

There are 12 sheets in PDB entry 8Z8Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	501	502	first strand
Strand 2	A	311	314	anti-parallel
Strand 3	A	297	304	anti-parallel
Strand 4	A	278	287	anti-parallel
Strand 5	A	356	361	parallel
Strand 6	A	382	389	parallel
Strand 7	A	441	447	anti-parallel
Strand 8	A	417	420	anti-parallel
Strand 9	A	409	414	anti-parallel
Strand 10	A	3	6	anti-parallel
Strand 11	B	410	412	parallel
Strand 12	B	169	171	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	20	first strand
Strand 2	A	12	13	anti-parallel
Strand 3	A	270	271	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	95	first strand
Strand 2	A	41	45	parallel
Strand 3	A	138	143	parallel
Strand 4	A	221	225	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	327	328	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	A	431	432	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	57	61	parallel
Strand 3	B	94	95	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	B	118	119	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	328	first strand
Strand 2	B	334	336	anti-parallel
Strand 3	B	175	180	anti-parallel
Strand 4	B	400	404	anti-parallel
Strand 5	B	390	394	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	209	first strand
Strand 2	B	214	216	anti-parallel
Strand 3	B	184	188	anti-parallel
Strand 4	B	239	242	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	286	first strand
Strand 2	B	291	294	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	305	first strand
Strand 2	B	308	309	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	314	first strand
Strand 2	B	317	323	anti-parallel
Strand 3	B	339	344	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z8Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z8Y