Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z90

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z90 entry

There are 2 chains in PDB entry 8Z90 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	TYR 622
B	MET 1	LYS 703

There are 72 helices in PDB entry 8Z90. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	17	Right-handed alpha
Helix 2	AA2	A	21	25	Right-handed 310
Helix 3	AA3	A	27	46	Right-handed alpha
Helix 4	AA4	A	64	75	Right-handed alpha
Helix 5	AA5	A	80	84	Right-handed 310
Helix 6	AA6	A	126	133	Right-handed alpha
Helix 7	AA7	A	134	154	Right-handed alpha
Helix 8	AA8	A	157	167	Right-handed alpha
Helix 9	AA9	A	176	184	Right-handed alpha
Helix 10	AB1	A	246	257	Right-handed alpha
Helix 11	AB2	A	270	272	Right-handed 310
Helix 12	AB3	A	273	287	Right-handed alpha
Helix 13	AB4	A	296	301	Right-handed alpha
Helix 14	AB5	A	304	316	Right-handed alpha
Helix 15	AB6	A	335	344	Right-handed alpha
Helix 16	AB7	A	362	381	Right-handed alpha
Helix 17	AB8	A	382	401	Right-handed alpha
Helix 18	AB9	A	485	493	Right-handed alpha
Helix 19	AC1	A	494	497	Right-handed 310
Helix 20	AC2	A	498	517	Right-handed alpha
Helix 21	AC3	A	540	557	Right-handed alpha
Helix 22	AC4	A	559	581	Right-handed alpha
Helix 23	AC5	A	594	599	Right-handed alpha
Helix 24	AC6	A	604	615	Right-handed alpha
Helix 25	AC7	B	1	5	Right-handed 310
Helix 26	AC8	B	11	20	Right-handed 310
Helix 27	AC9	B	33	42	Right-handed alpha
Helix 28	AD1	B	53	58	Right-handed alpha
Helix 29	AD2	B	66	70	Right-handed 310
Helix 30	AD3	B	80	94	Right-handed alpha
Helix 31	AD4	B	95	108	Right-handed alpha
Helix 32	AD5	B	109	113	Right-handed 310
Helix 33	AD6	B	114	121	Right-handed 310
Helix 34	AD7	B	134	150	Right-handed alpha
Helix 35	AD8	B	157	169	Right-handed alpha
Helix 36	AD9	B	216	224	Right-handed alpha
Helix 37	AE1	B	247	266	Right-handed alpha
Helix 38	AE2	B	274	278	Right-handed 310
Helix 39	AE3	B	279	287	Right-handed alpha
Helix 40	AE4	B	304	309	Right-handed alpha
Helix 41	AE5	B	310	326	Right-handed alpha
Helix 42	AE6	B	328	335	Right-handed alpha
Helix 43	AE7	B	336	342	Right-handed alpha
Helix 44	AE8	B	373	378	Right-handed 310
Helix 45	AE9	B	397	409	Right-handed alpha
Helix 46	AF1	B	432	451	Right-handed alpha
Helix 47	AF2	B	482	490	Right-handed 310
Helix 48	AF3	B	496	514	Right-handed alpha
Helix 49	AF4	B	518	537	Right-handed alpha
Helix 50	AF5	B	543	552	Right-handed alpha
Helix 51	AF6	B	558	562	Right-handed 310
Helix 52	AF7	B	575	583	Right-handed alpha
Helix 53	AF8	B	590	595	Right-handed alpha
Helix 54	AF9	B	643	646	Right-handed 310
Helix 55	AG1	B	647	662	Right-handed alpha
Helix 56	AG2	B	679	695	Right-handed alpha
Helix 57	AG3	B	698	709	Right-handed alpha
Helix 58	AG4	C	11	27	Right-handed alpha
Helix 59	AG5	C	27	32	Right-handed alpha
Helix 60	AG6	C	33	36	Right-handed 310
Helix 61	AG7	C	37	42	Right-handed alpha
Helix 62	AG8	C	53	55	Right-handed 310
Helix 63	AG9	C	56	61	Right-handed alpha
Helix 64	AH1	C	102	111	Right-handed alpha
Helix 65	AH2	C	115	123	Right-handed alpha
Helix 66	AH3	C	123	134	Right-handed alpha
Helix 67	AH4	C	166	176	Right-handed alpha
Helix 68	AH5	C	181	187	Right-handed alpha
Helix 69	AH6	C	192	201	Right-handed alpha
Helix 70	AH7	C	202	204	Right-handed 310
Helix 71	AH8	C	208	221	Right-handed alpha
Helix 72	AH9	C	240	245	Right-handed alpha

There are 18 sheets in PDB entry 8Z90. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	54	55	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	87	89	anti-parallel
Strand 3	A	94	96	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	585	587	anti-parallel
Strand 3	B	460	462	anti-parallel
Strand 4	B	297	301	anti-parallel
Strand 5	B	423	427	anti-parallel
Strand 6	B	416	420	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	423	431	anti-parallel
Strand 3	A	442	451	anti-parallel
Strand 4	A	473	484	anti-parallel
Strand 5	A	463	468	anti-parallel
Strand 6	A	260	264	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	423	431	anti-parallel
Strand 3	A	409	417	anti-parallel
Strand 4	A	290	291	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	323	first strand
Strand 2	B	353	357	anti-parallel
Strand 3	B	360	364	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	531	first strand
Strand 2	A	534	538	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	132	133	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	175	first strand
Strand 2	B	213	215	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	180	first strand
Strand 2	B	208	210	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	191	first strand
Strand 2	B	201	204	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	246	first strand
Strand 2	B	225	230	anti-parallel
Strand 3	B	346	348	parallel
Strand 4	B	384	386	anti-parallel
Strand 5	B	380	381	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	470	first strand
Strand 2	B	473	476	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	608	611	first strand
Strand 2	B	619	622	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	69	first strand
Strand 2	C	97	99	anti-parallel
Strand 3	C	85	89	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	C	82	83	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	143	first strand
Strand 2	C	249	251	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	154	first strand
Strand 2	C	224	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z90

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z90