Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z92

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z92 entry

There are 8 chains in PDB entry 8Z92 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	ILE 507
E	MET 1	PRO 419
G	MET 1	PRO 419
A	MET 1	ILE 507
D	C 1	T 16
F	T 0	T 20
H	C 1	T 16
I	T 0	T 20

There are 63 helices in PDB entry 8Z92. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	15	17	Right-handed 310
Helix 2	AA2	B	22	30	Right-handed alpha
Helix 3	AA3	B	47	60	Right-handed alpha
Helix 4	AA4	B	77	82	Right-handed alpha
Helix 5	AA5	B	97	106	Right-handed alpha
Helix 6	AA6	B	109	132	Right-handed alpha
Helix 7	AA7	B	144	149	Right-handed alpha
Helix 8	AA8	B	205	211	Right-handed alpha
Helix 9	AA9	B	226	230	Right-handed alpha
Helix 10	AB1	B	248	264	Right-handed alpha
Helix 11	AB2	B	331	350	Right-handed alpha
Helix 12	AB3	B	366	377	Right-handed alpha
Helix 13	AB4	B	451	465	Right-handed alpha
Helix 14	AB5	B	477	481	Right-handed 310
Helix 15	AB6	B	482	491	Right-handed alpha
Helix 16	AB7	B	502	506	Right-handed 310
Helix 17	AB8	E	14	28	Right-handed alpha
Helix 18	AB9	E	45	55	Right-handed alpha
Helix 19	AC1	E	65	71	Right-handed alpha
Helix 20	AC2	E	71	89	Right-handed alpha
Helix 21	AC3	E	109	114	Right-handed alpha
Helix 22	AC4	E	123	133	Right-handed alpha
Helix 23	AC5	E	133	138	Right-handed alpha
Helix 24	AC6	E	149	158	Right-handed alpha
Helix 25	AC7	E	199	204	Right-handed 310
Helix 26	AC8	E	234	238	Right-handed 310
Helix 27	AC9	E	243	247	Right-handed alpha
Helix 28	AD1	E	257	278	Right-handed alpha
Helix 29	AD2	E	300	302	Right-handed 310
Helix 30	AD3	E	353	366	Right-handed alpha
Helix 31	AD4	E	369	385	Right-handed alpha
Helix 32	AD5	G	14	28	Right-handed alpha
Helix 33	AD6	G	45	55	Right-handed alpha
Helix 34	AD7	G	65	71	Right-handed alpha
Helix 35	AD8	G	71	86	Right-handed alpha
Helix 36	AD9	G	109	114	Right-handed alpha
Helix 37	AE1	G	123	133	Right-handed alpha
Helix 38	AE2	G	133	138	Right-handed alpha
Helix 39	AE3	G	149	158	Right-handed alpha
Helix 40	AE4	G	199	204	Right-handed 310
Helix 41	AE5	G	234	238	Right-handed 310
Helix 42	AE6	G	243	248	Right-handed alpha
Helix 43	AE7	G	257	278	Right-handed alpha
Helix 44	AE8	G	300	302	Right-handed 310
Helix 45	AE9	G	353	366	Right-handed alpha
Helix 46	AF1	G	369	385	Right-handed alpha
Helix 47	AF2	A	14	18	Right-handed 310
Helix 48	AF3	A	22	30	Right-handed alpha
Helix 49	AF4	A	46	60	Right-handed alpha
Helix 50	AF5	A	77	83	Right-handed alpha
Helix 51	AF6	A	97	106	Right-handed alpha
Helix 52	AF7	A	109	132	Right-handed alpha
Helix 53	AF8	A	144	149	Right-handed alpha
Helix 54	AF9	A	205	213	Right-handed alpha
Helix 55	AG1	A	226	230	Right-handed alpha
Helix 56	AG2	A	248	264	Right-handed alpha
Helix 57	AG3	A	331	350	Right-handed alpha
Helix 58	AG4	A	366	377	Right-handed alpha
Helix 59	AG5	A	451	460	Right-handed alpha
Helix 60	AG6	A	460	465	Right-handed alpha
Helix 61	AG7	A	477	481	Right-handed 310
Helix 62	AG8	A	482	491	Right-handed alpha
Helix 63	AG9	A	504	506	Right-handed 310

There are 23 sheets in PDB entry 8Z92. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	E	409	415	parallel
Strand 3	E	167	173	anti-parallel
Strand 4	B	396	398	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	6	first strand
Strand 2	B	409	410	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	19	20	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	93	first strand
Strand 2	B	41	44	parallel
Strand 3	B	138	143	parallel
Strand 4	B	221	225	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	314	first strand
Strand 2	B	300	304	anti-parallel
Strand 3	B	278	284	anti-parallel
Strand 4	B	356	361	parallel
Strand 5	B	382	389	parallel
Strand 6	B	441	447	anti-parallel
Strand 7	B	417	420	anti-parallel
Strand 8	B	412	414	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	297	first strand
Strand 2	B	318	319	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	426	first strand
Strand 2	B	431	432	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	4	8	parallel
Strand 3	E	57	64	parallel
Strand 4	E	94	98	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	286	first strand
Strand 2	E	291	294	anti-parallel
Strand 3	E	317	328	anti-parallel
Strand 4	E	311	314	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	286	first strand
Strand 2	E	291	294	anti-parallel
Strand 3	E	317	328	anti-parallel
Strand 4	E	334	344	anti-parallel
Strand 5	E	175	180	anti-parallel
Strand 6	E	400	404	anti-parallel
Strand 7	E	390	394	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	208	209	first strand
Strand 2	E	214	216	anti-parallel
Strand 3	E	184	188	anti-parallel
Strand 4	E	239	242	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	305	first strand
Strand 2	E	308	309	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	34	first strand
Strand 2	G	4	8	parallel
Strand 3	G	57	64	parallel
Strand 4	G	94	98	parallel
Strand 5	G	118	119	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	409	415	first strand
Strand 2	G	167	173	anti-parallel
Strand 3	A	396	398	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	283	286	first strand
Strand 2	G	291	294	anti-parallel
Strand 3	G	317	328	anti-parallel
Strand 4	G	311	314	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	283	286	first strand
Strand 2	G	291	294	anti-parallel
Strand 3	G	317	328	anti-parallel
Strand 4	G	334	344	anti-parallel
Strand 5	G	175	180	anti-parallel
Strand 6	G	400	404	anti-parallel
Strand 7	G	390	394	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	184	187	first strand
Strand 2	G	239	242	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	208	209	first strand
Strand 2	G	214	215	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	304	305	first strand
Strand 2	G	308	309	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	409	410	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	95	first strand
Strand 2	A	41	45	parallel
Strand 3	A	138	143	parallel
Strand 4	A	221	225	parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	414	first strand
Strand 2	A	417	420	anti-parallel
Strand 3	A	441	447	anti-parallel
Strand 4	A	382	389	anti-parallel
Strand 5	A	356	361	parallel
Strand 6	A	278	284	parallel
Strand 7	A	296	304	anti-parallel
Strand 8	A	311	319	anti-parallel
Strand 9	A	501	502	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	A	431	432	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z92

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z92