Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z97

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z97 entry

There are 2 chains in PDB entry 8Z97 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	TYR 622
B	MET 1	LYS 703

There are 77 helices in PDB entry 8Z97. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	16	Right-handed alpha
Helix 2	AA2	A	21	25	Right-handed 310
Helix 3	AA3	A	27	46	Right-handed alpha
Helix 4	AA4	A	64	75	Right-handed alpha
Helix 5	AA5	A	126	133	Right-handed alpha
Helix 6	AA6	A	134	155	Right-handed alpha
Helix 7	AA7	A	157	167	Right-handed alpha
Helix 8	AA8	A	176	184	Right-handed alpha
Helix 9	AA9	A	185	187	Right-handed 310
Helix 10	AB1	A	246	257	Right-handed alpha
Helix 11	AB2	A	270	272	Right-handed 310
Helix 12	AB3	A	273	284	Right-handed alpha
Helix 13	AB4	A	285	287	Right-handed 310
Helix 14	AB5	A	296	302	Right-handed alpha
Helix 15	AB6	A	307	317	Right-handed alpha
Helix 16	AB7	A	335	343	Right-handed alpha
Helix 17	AB8	A	362	380	Right-handed alpha
Helix 18	AB9	A	382	400	Right-handed alpha
Helix 19	AC1	A	485	493	Right-handed alpha
Helix 20	AC2	A	494	497	Right-handed 310
Helix 21	AC3	A	498	516	Right-handed alpha
Helix 22	AC4	A	540	557	Right-handed alpha
Helix 23	AC5	A	559	581	Right-handed alpha
Helix 24	AC6	A	594	599	Right-handed alpha
Helix 25	AC7	A	604	617	Right-handed alpha
Helix 26	AC8	B	1	5	Right-handed 310
Helix 27	AC9	B	11	19	Right-handed 310
Helix 28	AD1	B	33	47	Right-handed alpha
Helix 29	AD2	B	53	58	Right-handed alpha
Helix 30	AD3	B	80	94	Right-handed alpha
Helix 31	AD4	B	95	108	Right-handed alpha
Helix 32	AD5	B	108	113	Right-handed alpha
Helix 33	AD6	B	114	121	Right-handed 310
Helix 34	AD7	B	134	151	Right-handed alpha
Helix 35	AD8	B	157	169	Right-handed alpha
Helix 36	AD9	B	216	224	Right-handed alpha
Helix 37	AE1	B	247	266	Right-handed alpha
Helix 38	AE2	B	276	286	Right-handed alpha
Helix 39	AE3	B	310	325	Right-handed alpha
Helix 40	AE4	B	328	343	Right-handed alpha
Helix 41	AE5	B	373	378	Right-handed 310
Helix 42	AE6	B	396	409	Right-handed alpha
Helix 43	AE7	B	432	451	Right-handed alpha
Helix 44	AE8	B	455	459	Right-handed 310
Helix 45	AE9	B	496	515	Right-handed alpha
Helix 46	AF1	B	518	537	Right-handed alpha
Helix 47	AF2	B	543	552	Right-handed alpha
Helix 48	AF3	B	558	562	Right-handed 310
Helix 49	AF4	B	575	583	Right-handed alpha
Helix 50	AF5	B	587	595	Right-handed alpha
Helix 51	AF6	B	653	666	Right-handed alpha
Helix 52	AF7	B	667	671	Right-handed 310
Helix 53	AF8	B	679	694	Right-handed alpha
Helix 54	AF9	B	698	708	Right-handed alpha
Helix 55	AG1	C	9	17	Right-handed alpha
Helix 56	AG2	C	21	25	Right-handed 310
Helix 57	AG3	C	34	36	Right-handed 310
Helix 58	AG4	C	37	42	Right-handed alpha
Helix 59	AG5	C	56	62	Right-handed alpha
Helix 60	AG6	C	102	110	Right-handed alpha
Helix 61	AG7	C	115	134	Right-handed alpha
Helix 62	AG8	C	166	176	Right-handed alpha
Helix 63	AG9	C	177	180	Right-handed 310
Helix 64	AH1	C	181	187	Right-handed alpha
Helix 65	AH2	C	189	204	Right-handed alpha
Helix 66	AH3	C	208	219	Right-handed alpha
Helix 67	AH4	C	240	245	Right-handed alpha
Helix 68	AH5	C	265	272	Right-handed alpha
Helix 69	AH6	C	275	279	Right-handed 310
Helix 70	AH7	C	283	289	Right-handed alpha
Helix 71	AH8	C	299	303	Right-handed alpha
Helix 72	AH9	C	310	320	Right-handed alpha
Helix 73	AI1	C	403	415	Right-handed alpha
Helix 74	AI2	C	450	455	Right-handed alpha
Helix 75	AI3	C	502	504	Right-handed 310
Helix 76	AI4	C	541	545	Right-handed 310
Helix 77	AI5	C	738	748	Right-handed alpha

There are 20 sheets in PDB entry 8Z97. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	87	89	anti-parallel
Strand 3	A	95	100	anti-parallel
Strand 4	A	115	119	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	585	587	anti-parallel
Strand 3	B	460	462	anti-parallel
Strand 4	B	294	300	anti-parallel
Strand 5	B	424	430	anti-parallel
Strand 6	B	416	419	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	423	431	anti-parallel
Strand 3	A	442	451	anti-parallel
Strand 4	A	409	417	first strand
Strand 5	A	290	291	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	262	first strand
Strand 2	A	465	469	anti-parallel
Strand 3	A	472	476	anti-parallel
Strand 4	A	442	451	anti-parallel
Strand 5	A	423	431	anti-parallel
Strand 6	A	479	484	first strand

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	323	first strand
Strand 2	B	353	356	anti-parallel
Strand 3	B	362	364	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	529	first strand
Strand 2	A	536	539	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	126	first strand
Strand 2	B	131	133	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	175	first strand
Strand 2	B	213	215	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	245	first strand
Strand 2	B	225	230	anti-parallel
Strand 3	B	346	348	parallel
Strand 4	B	384	386	anti-parallel
Strand 5	B	380	381	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	470	first strand
Strand 2	B	473	475	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	608	611	first strand
Strand 2	B	619	622	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	633	634	first strand
Strand 2	C	67	69	anti-parallel
Strand 3	C	97	99	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	C	82	83	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	143	first strand
Strand 2	C	249	251	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	154	first strand
Strand 2	C	224	227	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	294	first strand
Strand 2	C	297	298	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	330	first strand
Strand 2	C	333	345	anti-parallel
Strand 3	C	365	376	anti-parallel
Strand 4	C	379	386	anti-parallel
Strand 5	C	389	396	anti-parallel
Strand 6	C	481	483	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	457	first strand
Strand 2	C	477	478	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	499	500	first strand
Strand 2	C	506	509	anti-parallel
Strand 3	C	514	519	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	694	695	first strand
Strand 2	C	725	729	anti-parallel
Strand 3	C	718	722	anti-parallel
Strand 4	C	702	703	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z97

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z97