Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Z98 entry

There are 2 chains in PDB entry 8Z98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2TYR 622
B
 MET 1LYS 703
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 8Z98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 17Right-handed alpha
Helix 2
AA2
A
27 46Right-handed alpha
Helix 3
AA3
A
64 75Right-handed alpha
Helix 4
AA4
A
126 133Right-handed alpha
Helix 5
AA5
A
134 156Right-handed alpha
Helix 6
AA6
A
157 166Right-handed alpha
Helix 7
AA7
A
176 184Right-handed alpha
Helix 8
AA8
A
185 187Right-handed 310
Helix 9
AA9
A
233 237Right-handed 310
Helix 10
AB1
A
246 257Right-handed alpha
Helix 11
AB2
A
270 272Right-handed 310
Helix 12
AB3
A
273 286Right-handed alpha
Helix 13
AB4
A
294 299Right-handed alpha
Helix 14
AB5
A
304 317Right-handed alpha
Helix 15
AB6
A
335 345Right-handed alpha
Helix 16
AB7
A
362 381Right-handed alpha
Helix 17
AB8
A
382 400Right-handed alpha
Helix 18
AB9
A
485 493Right-handed alpha
Helix 19
AC1
A
494 497Right-handed 310
Helix 20
AC2
A
498 517Right-handed alpha
Helix 21
AC3
A
540 557Right-handed alpha
Helix 22
AC4
A
559 581Right-handed alpha
Helix 23
AC5
A
592 601Right-handed alpha
Helix 24
AC6
A
604 617Right-handed alpha
Helix 25
AC7
B
1 5Right-handed 310
Helix 26
AC8
B
11 16Right-handed alpha
Helix 27
AC9
B
17 19Right-handed 310
Helix 28
AD1
B
33 47Right-handed alpha
Helix 29
AD2
B
53 58Right-handed alpha
Helix 30
AD3
B
66 70Right-handed 310
Helix 31
AD4
B
80 94Right-handed alpha
Helix 32
AD5
B
95 108Right-handed alpha
Helix 33
AD6
B
108 113Right-handed alpha
Helix 34
AD7
B
114 121Right-handed 310
Helix 35
AD8
B
134 151Right-handed alpha
Helix 36
AD9
B
157 169Right-handed alpha
Helix 37
AE1
B
215 225Right-handed alpha
Helix 38
AE2
B
247 266Right-handed alpha
Helix 39
AE3
B
280 287Right-handed alpha
Helix 40
AE4
B
310 326Right-handed alpha
Helix 41
AE5
B
328 344Right-handed alpha
Helix 42
AE6
B
373 378Right-handed 310
Helix 43
AE7
B
396 409Right-handed alpha
Helix 44
AE8
B
432 449Right-handed alpha
Helix 45
AE9
B
496 514Right-handed alpha
Helix 46
AF1
B
518 537Right-handed alpha
Helix 47
AF2
B
543 552Right-handed alpha
Helix 48
AF3
B
558 562Right-handed 310
Helix 49
AF4
B
587 595Right-handed alpha
Helix 50
AF5
B
648 662Right-handed alpha
Helix 51
AF6
B
666 671Right-handed 310
Helix 52
AF7
B
679 693Right-handed alpha
Helix 53
AF8
B
698 708Right-handed alpha
Helix 54
AF9
C
11 15Right-handed alpha
Helix 55
AG1
C
17 27Right-handed alpha
Helix 56
AG2
C
27 32Right-handed alpha
Helix 57
AG3
C
34 36Right-handed 310
Helix 58
AG4
C
37 42Right-handed alpha
Helix 59
AG5
C
56 63Right-handed alpha
Helix 60
AG6
C
102 108Right-handed alpha
Helix 61
AG7
C
115 124Right-handed alpha
Helix 62
AG8
C
126 135Right-handed alpha
Helix 63
AG9
C
166 176Right-handed alpha
Helix 64
AH1
C
181 187Right-handed alpha
Helix 65
AH2
C
191 201Right-handed alpha
Helix 66
AH3
C
202 204Right-handed 310
Helix 67
AH4
C
208 221Right-handed alpha
Helix 68
AH5
C
234 239Right-handed alpha
Helix 69
AH6
C
240 245Right-handed alpha
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There are 13 sheets in PDB entry 8Z98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
87 89anti-parallel
Strand 3
A
94 100anti-parallel
Strand 4
A
115 119parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
585 587anti-parallel
Strand 3
B
460 462anti-parallel
Strand 4
B
294 301anti-parallel
Strand 5
B
423 430anti-parallel
Strand 6
B
416 420anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 242first strand
Strand 2
A
423 431anti-parallel
Strand 3
A
442 451anti-parallel
Strand 4
A
472 484anti-parallel
Strand 5
A
463 469anti-parallel
Strand 6
A
260 264anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 242first strand
Strand 2
A
423 431anti-parallel
Strand 3
A
409 417anti-parallel
Strand 4
A
290 291anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
B
353 356anti-parallel
Strand 3
B
362 364anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
526 531first strand
Strand 2
A
534 539anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
132 133anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 230first strand
Strand 2
B
242 245anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
380 381first strand
Strand 2
B
384 385anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
467 470first strand
Strand 2
B
473 476anti-parallel
Strand 3
B
479 482anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
67 68first strand
Strand 2
C
98 99anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
138 143first strand
Strand 2
C
249 253anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 154first strand
Strand 2
C
224 227anti-parallel
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