Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z99

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z99 entry

There are 15 chains in PDB entry 8Z99 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LYS 200
B	ALA 2	LYS 200
C	ALA 2	LYS 200
D	ALA 2	LYS 200
E	ALA 2	LYS 200
F	LYS 3	ASP 196
G	MET 1	LEU 239
H	MET 1	LEU 609
I	LYS 434	PRO 607
J	ALA 2	LYS 200
K	MET 1	LEU 609
L	LYS 433	LEU 609
M	G -9	C 45
N	C -16	C 37
P	LYS 3	ASP 196

There are 91 helices in PDB entry 8Z99. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	67	Right-handed alpha
Helix 2	AA2	A	84	90	Right-handed alpha
Helix 3	AA3	A	109	113	Right-handed alpha
Helix 4	AA4	A	156	172	Right-handed alpha
Helix 5	AA5	A	176	180	Right-handed 310
Helix 6	AA6	B	24	32	Right-handed alpha
Helix 7	AA7	B	51	67	Right-handed alpha
Helix 8	AA8	B	84	90	Right-handed alpha
Helix 9	AA9	B	109	113	Right-handed alpha
Helix 10	AB1	B	158	172	Right-handed alpha
Helix 11	AB2	B	196	198	Right-handed 310
Helix 12	AB3	C	24	31	Right-handed alpha
Helix 13	AB4	C	53	67	Right-handed alpha
Helix 14	AB5	C	85	90	Right-handed alpha
Helix 15	AB6	C	109	113	Right-handed alpha
Helix 16	AB7	C	156	172	Right-handed alpha
Helix 17	AB8	C	176	180	Right-handed 310
Helix 18	AB9	C	196	198	Right-handed 310
Helix 19	AC1	D	24	32	Right-handed alpha
Helix 20	AC2	D	51	67	Right-handed alpha
Helix 21	AC3	D	84	90	Right-handed alpha
Helix 22	AC4	D	109	113	Right-handed alpha
Helix 23	AC5	D	156	172	Right-handed alpha
Helix 24	AC6	E	24	32	Right-handed alpha
Helix 25	AC7	E	51	67	Right-handed alpha
Helix 26	AC8	E	84	90	Right-handed alpha
Helix 27	AC9	E	109	113	Right-handed alpha
Helix 28	AD1	E	157	172	Right-handed alpha
Helix 29	AD2	E	196	200	Right-handed 310
Helix 30	AD3	F	24	33	Right-handed alpha
Helix 31	AD4	F	51	66	Right-handed alpha
Helix 32	AD5	F	85	90	Right-handed alpha
Helix 33	AD6	F	109	112	Right-handed 310
Helix 34	AD7	F	156	172	Right-handed alpha
Helix 35	AD8	G	28	43	Right-handed alpha
Helix 36	AD9	G	45	53	Right-handed alpha
Helix 37	AE1	G	124	141	Right-handed alpha
Helix 38	AE2	H	40	53	Right-handed alpha
Helix 39	AE3	H	70	77	Right-handed alpha
Helix 40	AE4	H	86	107	Right-handed alpha
Helix 41	AE5	H	114	124	Right-handed alpha
Helix 42	AE6	H	207	220	Right-handed alpha
Helix 43	AE7	H	233	245	Right-handed alpha
Helix 44	AE8	H	255	268	Right-handed alpha
Helix 45	AE9	H	269	272	Right-handed 310
Helix 46	AF1	H	273	278	Right-handed alpha
Helix 47	AF2	H	295	305	Right-handed alpha
Helix 48	AF3	H	321	333	Right-handed alpha
Helix 49	AF4	H	348	356	Right-handed alpha
Helix 50	AF5	H	375	385	Right-handed alpha
Helix 51	AF6	H	399	413	Right-handed alpha
Helix 52	AF7	H	470	481	Right-handed alpha
Helix 53	AF8	H	509	523	Right-handed alpha
Helix 54	AF9	H	527	541	Right-handed alpha
Helix 55	AG1	H	541	554	Right-handed alpha
Helix 56	AG2	H	572	593	Right-handed alpha
Helix 57	AG3	H	594	603	Right-handed alpha
Helix 58	AG4	I	470	489	Right-handed alpha
Helix 59	AG5	I	509	523	Right-handed alpha
Helix 60	AG6	I	527	540	Right-handed alpha
Helix 61	AG7	I	541	554	Right-handed alpha
Helix 62	AG8	I	572	593	Right-handed alpha
Helix 63	AG9	I	594	604	Right-handed alpha
Helix 64	AH1	J	24	32	Right-handed alpha
Helix 65	AH2	J	51	67	Right-handed alpha
Helix 66	AH3	J	84	90	Right-handed alpha
Helix 67	AH4	J	109	113	Right-handed alpha
Helix 68	AH5	J	156	172	Right-handed alpha
Helix 69	AH6	K	42	53	Right-handed alpha
Helix 70	AH7	K	71	77	Right-handed alpha
Helix 71	AH8	K	86	104	Right-handed alpha
Helix 72	AH9	K	114	122	Right-handed alpha
Helix 73	AI1	K	377	386	Right-handed alpha
Helix 74	AI2	K	399	413	Right-handed alpha
Helix 75	AI3	K	470	489	Right-handed alpha
Helix 76	AI4	K	509	523	Right-handed alpha
Helix 77	AI5	K	527	540	Right-handed alpha
Helix 78	AI6	K	541	554	Right-handed alpha
Helix 79	AI7	K	572	593	Right-handed alpha
Helix 80	AI8	K	594	603	Right-handed alpha
Helix 81	AI9	L	470	486	Right-handed alpha
Helix 82	AJ1	L	509	523	Right-handed alpha
Helix 83	AJ2	L	527	541	Right-handed alpha
Helix 84	AJ3	L	541	554	Right-handed alpha
Helix 85	AJ4	L	572	593	Right-handed alpha
Helix 86	AJ5	L	594	603	Right-handed alpha
Helix 87	AJ6	P	24	32	Right-handed alpha
Helix 88	AJ7	P	51	67	Right-handed alpha
Helix 89	AJ8	P	84	91	Right-handed alpha
Helix 90	AJ9	P	109	114	Right-handed alpha
Helix 91	AK1	P	154	170	Right-handed alpha

There are 39 sheets in PDB entry 8Z99. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	143	150	anti-parallel
Strand 3	A	4	14	anti-parallel
Strand 4	A	184	187	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	143	150	anti-parallel
Strand 3	A	4	14	anti-parallel
Strand 4	A	190	194	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	A	137	138	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	104	106	anti-parallel
Strand 3	B	143	151	anti-parallel
Strand 4	B	99	100	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	104	106	anti-parallel
Strand 3	B	143	151	anti-parallel
Strand 4	B	4	14	anti-parallel
Strand 5	B	184	194	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	122	first strand
Strand 2	B	129	138	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	49	first strand
Strand 2	C	104	106	anti-parallel
Strand 3	C	143	151	anti-parallel
Strand 4	C	4	14	anti-parallel
Strand 5	C	184	188	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	101	first strand
Strand 2	C	143	151	anti-parallel
Strand 3	C	4	14	anti-parallel
Strand 4	C	191	194	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	122	first strand
Strand 2	C	129	138	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	49	first strand
Strand 2	D	104	106	anti-parallel
Strand 3	D	143	151	anti-parallel
Strand 4	D	99	101	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	49	first strand
Strand 2	D	104	106	anti-parallel
Strand 3	D	143	151	anti-parallel
Strand 4	D	4	14	anti-parallel
Strand 5	D	184	194	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	122	first strand
Strand 2	D	129	138	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	106	first strand
Strand 2	E	143	151	anti-parallel
Strand 3	E	4	13	anti-parallel
Strand 4	E	186	194	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	122	first strand
Strand 2	E	129	138	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	49	first strand
Strand 2	F	104	106	anti-parallel
Strand 3	F	143	151	anti-parallel
Strand 4	F	99	101	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	49	first strand
Strand 2	F	104	106	anti-parallel
Strand 3	F	143	151	anti-parallel
Strand 4	F	5	14	anti-parallel
Strand 5	F	184	193	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	119	first strand
Strand 2	F	133	138	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	61	first strand
Strand 2	G	115	122	anti-parallel
Strand 3	G	3	10	anti-parallel
Strand 4	G	155	158	anti-parallel
Strand 5	G	143	144	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	76	first strand
Strand 2	G	83	84	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	102	first strand
Strand 2	G	105	110	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	180	181	first strand
Strand 2	G	204	209	anti-parallel
Strand 3	G	187	191	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	26	first strand
Strand 2	H	57	58	parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	136	first strand
Strand 2	H	139	145	anti-parallel
Strand 3	H	153	159	anti-parallel
Strand 4	H	162	168	anti-parallel
Strand 5	H	191	195	parallel
Strand 6	H	392	396	parallel
Strand 7	H	416	418	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	225	226	first strand
Strand 2	H	310	311	parallel
Strand 3	H	251	253	parallel
Strand 4	H	291	292	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	435	436	first strand
Strand 2	H	466	469	parallel
Strand 3	H	451	461	anti-parallel
Strand 4	H	445	446	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	435	436	first strand
Strand 2	H	466	469	parallel
Strand 3	H	451	461	anti-parallel
Strand 4	K	454	461	anti-parallel
Strand 5	K	465	469	anti-parallel
Strand 6	K	435	438	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	458	459	first strand
Strand 2	I	468	469	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	99	101	first strand
Strand 2	J	143	151	anti-parallel
Strand 3	J	105	106	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	99	101	first strand
Strand 2	J	143	151	anti-parallel
Strand 3	J	4	14	anti-parallel
Strand 4	J	184	194	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	114	115	first strand
Strand 2	J	137	138	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	118	122	first strand
Strand 2	J	129	134	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	2	4	first strand
Strand 2	K	16	18	anti-parallel
Strand 3	K	25	27	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	83	85	first strand
Strand 2	K	125	127	parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	141	144	first strand
Strand 2	K	154	159	anti-parallel
Strand 3	K	162	168	anti-parallel
Strand 4	K	191	195	parallel
Strand 5	K	392	396	parallel
Strand 6	K	416	418	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	445	447	first strand
Strand 2	K	450	452	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	436	437	first strand
Strand 2	L	466	469	parallel
Strand 3	L	458	461	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	5	6	first strand
Strand 2	P	192	193	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	105	106	first strand
Strand 2	P	143	147	anti-parallel
Strand 3	P	9	14	anti-parallel
Strand 4	P	184	187	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	117	119	first strand
Strand 2	P	133	135	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z99

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z99