Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z9A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Z9A entry

There are 4 chains in PDB entry 8Z9A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5LYS 463
B
 LYS 5LYS 463
C
 LYS 5LYS 463
D
 ILE 4THR 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8Z9A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed alpha
Helix 2
AA2
A
12 23Right-handed alpha
Helix 3
AA3
A
34 65Right-handed alpha
Helix 4
AA4
A
69 95Right-handed alpha
Helix 5
AA5
A
96 105Right-handed alpha
Helix 6
AA6
A
113 115Right-handed 310
Helix 7
AA7
A
116 152Right-handed alpha
Helix 8
AA8
A
153 155Right-handed 310
Helix 9
AA9
A
191 237Right-handed alpha
Helix 10
AB1
A
237 245Right-handed alpha
Helix 11
AB2
A
304 336Right-handed alpha
Helix 12
AB3
A
337 359Right-handed alpha
Helix 13
AB4
A
365 405Right-handed alpha
Helix 14
AB5
A
412 426Right-handed alpha
Helix 15
AB6
A
441 463Right-handed alpha
Helix 16
AB7
B
7 12Right-handed alpha
Helix 17
AB8
B
12 22Right-handed alpha
Helix 18
AB9
B
36 66Right-handed alpha
Helix 19
AC1
B
69 95Right-handed alpha
Helix 20
AC2
B
96 105Right-handed alpha
Helix 21
AC3
B
113 115Right-handed 310
Helix 22
AC4
B
116 152Right-handed alpha
Helix 23
AC5
B
153 156Right-handed 310
Helix 24
AC6
B
191 237Right-handed alpha
Helix 25
AC7
B
237 245Right-handed alpha
Helix 26
AC8
B
304 336Right-handed alpha
Helix 27
AC9
B
337 359Right-handed alpha
Helix 28
AD1
B
365 398Right-handed alpha
Helix 29
AD2
B
398 405Right-handed alpha
Helix 30
AD3
B
412 426Right-handed alpha
Helix 31
AD4
B
441 463Right-handed alpha
Helix 32
AD5
C
7 12Right-handed alpha
Helix 33
AD6
C
12 22Right-handed alpha
Helix 34
AD7
C
36 66Right-handed alpha
Helix 35
AD8
C
69 95Right-handed alpha
Helix 36
AD9
C
96 107Right-handed alpha
Helix 37
AE1
C
116 149Right-handed alpha
Helix 38
AE2
C
192 237Right-handed alpha
Helix 39
AE3
C
237 246Right-handed alpha
Helix 40
AE4
C
304 336Right-handed alpha
Helix 41
AE5
C
336 358Right-handed alpha
Helix 42
AE6
C
365 397Right-handed alpha
Helix 43
AE7
C
398 406Right-handed alpha
Helix 44
AE8
C
407 411Right-handed 310
Helix 45
AE9
C
412 426Right-handed alpha
Helix 46
AF1
C
441 463Right-handed alpha
Helix 47
AF2
D
5 14Right-handed alpha
Helix 48
AF3
D
20 46Right-handed alpha
Helix 49
AF4
D
50 77Right-handed alpha
Helix 50
AF5
D
77 89Right-handed alpha
Helix 51
AF6
D
94 124Right-handed alpha
Helix 52
AF7
D
149 200Right-handed alpha
Helix 53
AF8
D
204 256Right-handed alpha
Helix 54
AF9
D
260 262Right-handed 310
Helix 55
AG1
D
263 271Right-handed alpha
Helix 56
AG2
D
271 287Right-handed alpha
Helix 57
AG3
D
290 300Right-handed alpha
Helix 58
AG4
D
301 306Right-handed 310
Helix 59
AG5
D
310 322Right-handed alpha
Helix 60
AG6
D
337 360Right-handed alpha
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There are 4 sheets in PDB entry 8Z9A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 163first strand
Strand 2
A
171 175anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 434first strand
Strand 2
A
438 439anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 163first strand
Strand 2
B
171 175anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
329 330first strand
Strand 2
D
334 335anti-parallel
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