Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z9C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z9C entry

There are 14 chains in PDB entry 8Z9C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LYS 200
B	ALA 2	LYS 200
C	ALA 2	LYS 200
D	ALA 2	LYS 200
E	ALA 2	LYS 200
F	LYS 3	ASP 196
G	MET 1	LEU 239
H	MET 1	LEU 609
I	VAL 435	PRO 607
J	LYS 3	LYS 200
K	ILE 2	LEU 609
L	LYS 433	LEU 609
M	G -9	U 39
N	C -16	C 37

There are 78 helices in PDB entry 8Z9C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	66	Right-handed alpha
Helix 2	AA2	A	85	90	Right-handed alpha
Helix 3	AA3	A	109	114	Right-handed alpha
Helix 4	AA4	A	155	171	Right-handed alpha
Helix 5	AA5	B	24	31	Right-handed alpha
Helix 6	AA6	B	51	64	Right-handed alpha
Helix 7	AA7	B	85	90	Right-handed alpha
Helix 8	AA8	B	109	113	Right-handed alpha
Helix 9	AA9	B	157	171	Right-handed alpha
Helix 10	AB1	B	176	180	Right-handed 310
Helix 11	AB2	C	24	31	Right-handed alpha
Helix 12	AB3	C	53	67	Right-handed alpha
Helix 13	AB4	C	85	90	Right-handed alpha
Helix 14	AB5	C	157	172	Right-handed alpha
Helix 15	AB6	D	24	30	Right-handed alpha
Helix 16	AB7	D	51	67	Right-handed alpha
Helix 17	AB8	D	84	90	Right-handed alpha
Helix 18	AB9	D	160	171	Right-handed alpha
Helix 19	AC1	E	24	30	Right-handed alpha
Helix 20	AC2	E	51	67	Right-handed alpha
Helix 21	AC3	E	84	90	Right-handed alpha
Helix 22	AC4	E	109	113	Right-handed alpha
Helix 23	AC5	E	156	172	Right-handed alpha
Helix 24	AC6	E	194	199	Right-handed 310
Helix 25	AC7	F	24	30	Right-handed alpha
Helix 26	AC8	F	51	67	Right-handed alpha
Helix 27	AC9	F	84	90	Right-handed alpha
Helix 28	AD1	F	155	171	Right-handed alpha
Helix 29	AD2	G	28	43	Right-handed alpha
Helix 30	AD3	G	47	53	Right-handed alpha
Helix 31	AD4	G	93	95	Right-handed 310
Helix 32	AD5	G	127	142	Right-handed alpha
Helix 33	AD6	H	42	53	Right-handed alpha
Helix 34	AD7	H	70	77	Right-handed alpha
Helix 35	AD8	H	86	107	Right-handed alpha
Helix 36	AD9	H	114	124	Right-handed alpha
Helix 37	AE1	H	207	221	Right-handed alpha
Helix 38	AE2	H	234	245	Right-handed alpha
Helix 39	AE3	H	255	268	Right-handed alpha
Helix 40	AE4	H	295	304	Right-handed alpha
Helix 41	AE5	H	322	333	Right-handed alpha
Helix 42	AE6	H	348	355	Right-handed alpha
Helix 43	AE7	H	375	385	Right-handed alpha
Helix 44	AE8	H	399	413	Right-handed alpha
Helix 45	AE9	H	471	481	Right-handed alpha
Helix 46	AF1	H	509	523	Right-handed alpha
Helix 47	AF2	H	527	541	Right-handed alpha
Helix 48	AF3	H	541	554	Right-handed alpha
Helix 49	AF4	H	572	593	Right-handed alpha
Helix 50	AF5	H	594	602	Right-handed alpha
Helix 51	AF6	I	470	488	Right-handed alpha
Helix 52	AF7	I	509	523	Right-handed alpha
Helix 53	AF8	I	527	541	Right-handed alpha
Helix 54	AF9	I	541	554	Right-handed alpha
Helix 55	AG1	I	572	592	Right-handed alpha
Helix 56	AG2	I	594	603	Right-handed alpha
Helix 57	AG3	J	24	32	Right-handed alpha
Helix 58	AG4	J	51	66	Right-handed alpha
Helix 59	AG5	J	84	90	Right-handed alpha
Helix 60	AG6	J	109	113	Right-handed alpha
Helix 61	AG7	J	155	171	Right-handed alpha
Helix 62	AG8	J	176	180	Right-handed 310
Helix 63	AG9	J	196	199	Right-handed 310
Helix 64	AH1	K	377	384	Right-handed alpha
Helix 65	AH2	K	401	413	Right-handed alpha
Helix 66	AH3	K	446	450	Right-handed 310
Helix 67	AH4	K	470	486	Right-handed alpha
Helix 68	AH5	K	509	523	Right-handed alpha
Helix 69	AH6	K	527	540	Right-handed alpha
Helix 70	AH7	K	541	553	Right-handed alpha
Helix 71	AH8	K	572	593	Right-handed alpha
Helix 72	AH9	K	594	603	Right-handed alpha
Helix 73	AI1	L	471	487	Right-handed alpha
Helix 74	AI2	L	511	523	Right-handed alpha
Helix 75	AI3	L	527	540	Right-handed alpha
Helix 76	AI4	L	542	554	Right-handed alpha
Helix 77	AI5	L	572	591	Right-handed alpha
Helix 78	AI6	L	594	603	Right-handed alpha

There are 33 sheets in PDB entry 8Z9C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	145	150	anti-parallel
Strand 3	A	5	14	anti-parallel
Strand 4	A	184	186	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	145	150	anti-parallel
Strand 3	A	5	14	anti-parallel
Strand 4	A	189	193	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	104	105	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	45	49	anti-parallel
Strand 3	B	104	106	anti-parallel
Strand 4	B	143	151	anti-parallel
Strand 5	B	99	100	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	45	49	anti-parallel
Strand 3	B	104	106	anti-parallel
Strand 4	B	143	151	anti-parallel
Strand 5	B	5	14	anti-parallel
Strand 6	B	184	193	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	122	first strand
Strand 2	B	129	138	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	49	first strand
Strand 2	C	104	106	anti-parallel
Strand 3	C	143	150	anti-parallel
Strand 4	C	99	101	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	49	first strand
Strand 2	C	104	106	anti-parallel
Strand 3	C	143	150	anti-parallel
Strand 4	C	5	13	anti-parallel
Strand 5	C	186	193	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	122	first strand
Strand 2	C	129	138	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	143	150	anti-parallel
Strand 3	D	105	106	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	143	150	anti-parallel
Strand 3	D	4	14	anti-parallel
Strand 4	D	184	194	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	122	first strand
Strand 2	D	129	138	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	49	first strand
Strand 2	E	104	106	anti-parallel
Strand 3	E	143	151	anti-parallel
Strand 4	E	5	14	anti-parallel
Strand 5	E	184	189	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	122	first strand
Strand 2	E	129	138	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	6	first strand
Strand 2	F	192	193	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	143	145	first strand
Strand 2	F	9	14	anti-parallel
Strand 3	F	184	189	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	122	first strand
Strand 2	F	129	138	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	61	first strand
Strand 2	G	115	122	anti-parallel
Strand 3	G	2	10	anti-parallel
Strand 4	G	155	158	anti-parallel
Strand 5	G	143	144	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	61	first strand
Strand 2	G	115	122	anti-parallel
Strand 3	G	2	10	anti-parallel
Strand 4	G	162	165	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	102	first strand
Strand 2	G	105	110	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	4	first strand
Strand 2	H	14	20	anti-parallel
Strand 3	H	23	30	anti-parallel
Strand 4	H	57	59	parallel
Strand 5	H	83	85	parallel
Strand 6	H	125	127	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	139	142	first strand
Strand 2	H	155	159	anti-parallel
Strand 3	H	162	168	anti-parallel
Strand 4	H	191	194	parallel
Strand 5	H	392	393	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	251	254	first strand
Strand 2	H	310	313	parallel
Strand 3	H	225	226	parallel
Strand 4	H	337	338	parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	434	436	first strand
Strand 2	H	465	470	parallel
Strand 3	H	454	462	anti-parallel
Strand 4	K	452	462	anti-parallel
Strand 5	K	465	469	anti-parallel
Strand 6	K	438	439	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	445	446	first strand
Strand 2	H	451	452	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	436	437	first strand
Strand 2	I	467	468	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	451	454	first strand
Strand 2	L	457	461	anti-parallel
Strand 3	L	466	470	anti-parallel
Strand 4	L	435	437	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	457	458	first strand
Strand 2	L	454	455	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	48	49	first strand
Strand 2	J	104	106	anti-parallel
Strand 3	J	143	150	anti-parallel
Strand 4	J	99	101	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	48	49	first strand
Strand 2	J	104	106	anti-parallel
Strand 3	J	143	150	anti-parallel
Strand 4	J	4	14	anti-parallel
Strand 5	J	184	194	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	114	122	first strand
Strand 2	J	129	138	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	141	143	first strand
Strand 2	K	155	158	anti-parallel
Strand 3	K	163	168	anti-parallel
Strand 4	K	191	195	parallel
Strand 5	K	392	396	parallel
Strand 6	K	416	418	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	445	447	first strand
Strand 2	L	450	452	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z9C

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z9C