Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z9E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z9E entry

There are 13 chains in PDB entry 8Z9E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 2	LYS 200
C	ALA 2	LYS 200
D	ALA 2	LYS 200
E	LYS 3	LYS 200
F	LYS 3	ASP 196
G	GLU 3	LYS 211
H	MET 1	LEU 609
I	VAL 435	PRO 607
J	LYS 3	LYS 200
K	MET 1	LEU 609
L	LYS 433	ASN 606
M	G -9	G 30
N	C -16	C 37

There are 78 helices in PDB entry 8Z9E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	51	66	Right-handed alpha
Helix 2	AA2	B	84	90	Right-handed alpha
Helix 3	AA3	B	156	172	Right-handed alpha
Helix 4	AA4	B	176	180	Right-handed 310
Helix 5	AA5	C	24	30	Right-handed alpha
Helix 6	AA6	C	53	67	Right-handed alpha
Helix 7	AA7	C	84	90	Right-handed alpha
Helix 8	AA8	C	109	113	Right-handed alpha
Helix 9	AA9	C	124	127	Right-handed 310
Helix 10	AB1	C	157	172	Right-handed alpha
Helix 11	AB2	D	24	32	Right-handed alpha
Helix 12	AB3	D	51	67	Right-handed alpha
Helix 13	AB4	D	84	90	Right-handed alpha
Helix 14	AB5	D	109	113	Right-handed alpha
Helix 15	AB6	D	156	172	Right-handed alpha
Helix 16	AB7	E	24	32	Right-handed alpha
Helix 17	AB8	E	51	67	Right-handed alpha
Helix 18	AB9	E	84	91	Right-handed alpha
Helix 19	AC1	E	109	113	Right-handed alpha
Helix 20	AC2	E	156	172	Right-handed alpha
Helix 21	AC3	E	176	180	Right-handed 310
Helix 22	AC4	E	196	198	Right-handed 310
Helix 23	AC5	F	24	32	Right-handed alpha
Helix 24	AC6	F	52	67	Right-handed alpha
Helix 25	AC7	F	84	90	Right-handed alpha
Helix 26	AC8	F	109	113	Right-handed alpha
Helix 27	AC9	F	157	172	Right-handed alpha
Helix 28	AD1	G	28	43	Right-handed alpha
Helix 29	AD2	G	46	53	Right-handed alpha
Helix 30	AD3	G	93	95	Right-handed 310
Helix 31	AD4	G	127	141	Right-handed alpha
Helix 32	AD5	H	41	53	Right-handed alpha
Helix 33	AD6	H	70	77	Right-handed alpha
Helix 34	AD7	H	86	107	Right-handed alpha
Helix 35	AD8	H	114	124	Right-handed alpha
Helix 36	AD9	H	209	220	Right-handed alpha
Helix 37	AE1	H	233	245	Right-handed alpha
Helix 38	AE2	H	255	268	Right-handed alpha
Helix 39	AE3	H	269	272	Right-handed 310
Helix 40	AE4	H	273	277	Right-handed 310
Helix 41	AE5	H	295	305	Right-handed alpha
Helix 42	AE6	H	322	333	Right-handed alpha
Helix 43	AE7	H	348	355	Right-handed alpha
Helix 44	AE8	H	375	385	Right-handed alpha
Helix 45	AE9	H	399	413	Right-handed alpha
Helix 46	AF1	H	471	478	Right-handed alpha
Helix 47	AF2	H	509	523	Right-handed alpha
Helix 48	AF3	H	527	541	Right-handed alpha
Helix 49	AF4	H	541	554	Right-handed alpha
Helix 50	AF5	H	572	592	Right-handed alpha
Helix 51	AF6	H	594	606	Right-handed alpha
Helix 52	AF7	I	470	489	Right-handed alpha
Helix 53	AF8	I	509	523	Right-handed alpha
Helix 54	AF9	I	527	540	Right-handed alpha
Helix 55	AG1	I	541	554	Right-handed alpha
Helix 56	AG2	I	572	593	Right-handed alpha
Helix 57	AG3	I	594	603	Right-handed alpha
Helix 58	AG4	J	24	32	Right-handed alpha
Helix 59	AG5	J	51	67	Right-handed alpha
Helix 60	AG6	J	84	90	Right-handed alpha
Helix 61	AG7	J	109	113	Right-handed alpha
Helix 62	AG8	J	156	172	Right-handed alpha
Helix 63	AG9	K	377	385	Right-handed alpha
Helix 64	AH1	K	399	412	Right-handed alpha
Helix 65	AH2	K	446	450	Right-handed 310
Helix 66	AH3	K	470	487	Right-handed alpha
Helix 67	AH4	K	509	523	Right-handed alpha
Helix 68	AH5	K	527	540	Right-handed alpha
Helix 69	AH6	K	541	554	Right-handed alpha
Helix 70	AH7	K	572	591	Right-handed alpha
Helix 71	AH8	K	594	603	Right-handed alpha
Helix 72	AH9	L	470	488	Right-handed alpha
Helix 73	AI1	L	511	523	Right-handed alpha
Helix 74	AI2	L	527	535	Right-handed alpha
Helix 75	AI3	L	546	554	Right-handed alpha
Helix 76	AI4	L	572	590	Right-handed alpha
Helix 77	AI5	L	595	600	Right-handed alpha
Helix 78	AI6	L	601	606	Right-handed 310

There are 35 sheets in PDB entry 8Z9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	104	106	anti-parallel
Strand 3	B	143	151	anti-parallel
Strand 4	B	99	101	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	104	106	anti-parallel
Strand 3	B	143	151	anti-parallel
Strand 4	B	4	13	anti-parallel
Strand 5	B	185	194	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	115	first strand
Strand 2	B	137	138	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	101	first strand
Strand 2	C	143	150	anti-parallel
Strand 3	C	105	106	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	101	first strand
Strand 2	C	143	150	anti-parallel
Strand 3	C	4	14	anti-parallel
Strand 4	C	184	194	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	116	first strand
Strand 2	C	136	138	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	122	first strand
Strand 2	C	129	133	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	143	150	anti-parallel
Strand 3	D	105	106	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	143	150	anti-parallel
Strand 3	D	4	14	anti-parallel
Strand 4	D	184	194	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	122	first strand
Strand 2	D	129	138	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	100	first strand
Strand 2	E	143	151	anti-parallel
Strand 3	E	105	106	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	100	first strand
Strand 2	E	143	151	anti-parallel
Strand 3	E	4	14	anti-parallel
Strand 4	E	184	194	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	122	first strand
Strand 2	E	129	138	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	49	first strand
Strand 2	F	104	106	anti-parallel
Strand 3	F	143	151	anti-parallel
Strand 4	F	99	101	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	49	first strand
Strand 2	F	104	106	anti-parallel
Strand 3	F	143	151	anti-parallel
Strand 4	F	5	14	anti-parallel
Strand 5	F	184	193	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	122	first strand
Strand 2	F	129	138	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	115	120	first strand
Strand 2	G	4	10	anti-parallel
Strand 3	G	155	161	anti-parallel
Strand 4	G	143	144	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	18	first strand
Strand 2	G	22	23	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	101	first strand
Strand 2	G	106	110	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	187	192	first strand
Strand 2	G	203	208	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	5	first strand
Strand 2	H	14	19	anti-parallel
Strand 3	H	24	30	anti-parallel
Strand 4	H	55	59	parallel
Strand 5	H	80	85	parallel
Strand 6	H	125	127	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	136	first strand
Strand 2	H	139	145	anti-parallel
Strand 3	H	153	159	anti-parallel
Strand 4	H	162	168	anti-parallel
Strand 5	H	191	194	parallel
Strand 6	H	392	395	parallel
Strand 7	H	416	417	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	226	229	first strand
Strand 2	H	310	314	parallel
Strand 3	H	251	253	parallel
Strand 4	H	290	292	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	338	340	first strand
Strand 2	H	364	366	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	445	446	first strand
Strand 2	H	451	460	anti-parallel
Strand 3	H	467	470	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	445	446	first strand
Strand 2	H	451	460	anti-parallel
Strand 3	K	454	461	anti-parallel
Strand 4	K	465	469	anti-parallel
Strand 5	K	435	438	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	436	437	first strand
Strand 2	I	467	469	parallel
Strand 3	I	450	460	anti-parallel
Strand 4	I	445	447	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	436	437	first strand
Strand 2	I	467	469	parallel
Strand 3	I	450	460	anti-parallel
Strand 4	L	454	461	anti-parallel
Strand 5	L	466	469	anti-parallel
Strand 6	L	435	437	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	99	100	first strand
Strand 2	J	143	150	anti-parallel
Strand 3	J	105	106	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	99	100	first strand
Strand 2	J	143	150	anti-parallel
Strand 3	J	4	14	anti-parallel
Strand 4	J	184	194	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	114	122	first strand
Strand 2	J	129	138	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	2	3	first strand
Strand 2	K	17	18	anti-parallel
Strand 3	K	25	26	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	56	57	first strand
Strand 2	K	82	83	parallel

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There are 7 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	133	134	first strand
Strand 2	K	140	143	anti-parallel
Strand 3	K	155	158	anti-parallel
Strand 4	K	163	166	anti-parallel
Strand 5	K	191	195	parallel
Strand 6	K	392	396	parallel
Strand 7	K	416	418	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	445	447	first strand
Strand 2	L	450	452	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z9E

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z9E