Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z9H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z9H entry

There are 11 chains in PDB entry 8Z9H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	TYR 622
B	MET 1	PHE 710
C	GLU 8	ARG 755
D	A 1	G 12
E	U 13	U 17
F	G 5	U 17
G	G 2	A 10
H	SER 174	TYR 622
I	MET 1	SER 635
J	ALA 43	TRP 129
K	G 2	A 10

There are124 helices in PDB entry 8Z9H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	16	Right-handed alpha
Helix 2	AA2	A	27	46	Right-handed alpha
Helix 3	AA3	A	64	74	Right-handed alpha
Helix 4	AA4	A	126	133	Right-handed alpha
Helix 5	AA5	A	134	155	Right-handed alpha
Helix 6	AA6	A	157	167	Right-handed alpha
Helix 7	AA7	A	177	184	Right-handed alpha
Helix 8	AA8	A	185	187	Right-handed 310
Helix 9	AA9	A	233	237	Right-handed 310
Helix 10	AB1	A	246	257	Right-handed alpha
Helix 11	AB2	A	270	272	Right-handed 310
Helix 12	AB3	A	273	286	Right-handed alpha
Helix 13	AB4	A	294	302	Right-handed alpha
Helix 14	AB5	A	304	317	Right-handed alpha
Helix 15	AB6	A	335	343	Right-handed alpha
Helix 16	AB7	A	362	380	Right-handed alpha
Helix 17	AB8	A	382	400	Right-handed alpha
Helix 18	AB9	A	485	493	Right-handed alpha
Helix 19	AC1	A	494	497	Right-handed 310
Helix 20	AC2	A	498	517	Right-handed alpha
Helix 21	AC3	A	540	556	Right-handed alpha
Helix 22	AC4	A	559	580	Right-handed alpha
Helix 23	AC5	A	594	599	Right-handed alpha
Helix 24	AC6	A	604	617	Right-handed alpha
Helix 25	AC7	B	1	5	Right-handed 310
Helix 26	AC8	B	11	19	Right-handed 310
Helix 27	AC9	B	33	47	Right-handed alpha
Helix 28	AD1	B	53	58	Right-handed alpha
Helix 29	AD2	B	80	94	Right-handed alpha
Helix 30	AD3	B	95	108	Right-handed alpha
Helix 31	AD4	B	114	121	Right-handed 310
Helix 32	AD5	B	134	151	Right-handed alpha
Helix 33	AD6	B	157	169	Right-handed alpha
Helix 34	AD7	B	216	224	Right-handed alpha
Helix 35	AD8	B	247	266	Right-handed alpha
Helix 36	AD9	B	277	287	Right-handed alpha
Helix 37	AE1	B	310	325	Right-handed alpha
Helix 38	AE2	B	328	344	Right-handed alpha
Helix 39	AE3	B	373	378	Right-handed 310
Helix 40	AE4	B	396	409	Right-handed alpha
Helix 41	AE5	B	432	449	Right-handed alpha
Helix 42	AE6	B	456	459	Right-handed 310
Helix 43	AE7	B	496	515	Right-handed alpha
Helix 44	AE8	B	518	537	Right-handed alpha
Helix 45	AE9	B	543	552	Right-handed alpha
Helix 46	AF1	B	558	562	Right-handed 310
Helix 47	AF2	B	575	583	Right-handed alpha
Helix 48	AF3	B	587	595	Right-handed alpha
Helix 49	AF4	B	646	666	Right-handed alpha
Helix 50	AF5	B	667	671	Right-handed 310
Helix 51	AF6	B	679	694	Right-handed alpha
Helix 52	AF7	B	698	708	Right-handed alpha
Helix 53	AF8	C	9	27	Right-handed alpha
Helix 54	AF9	C	34	36	Right-handed 310
Helix 55	AG1	C	37	42	Right-handed alpha
Helix 56	AG2	C	52	55	Right-handed 310
Helix 57	AG3	C	56	62	Right-handed alpha
Helix 58	AG4	C	102	109	Right-handed alpha
Helix 59	AG5	C	115	123	Right-handed alpha
Helix 60	AG6	C	123	134	Right-handed alpha
Helix 61	AG7	C	163	165	Right-handed 310
Helix 62	AG8	C	166	176	Right-handed alpha
Helix 63	AG9	C	177	180	Right-handed 310
Helix 64	AH1	C	181	188	Right-handed alpha
Helix 65	AH2	C	189	204	Right-handed alpha
Helix 66	AH3	C	208	221	Right-handed alpha
Helix 67	AH4	C	237	239	Right-handed 310
Helix 68	AH5	C	240	245	Right-handed alpha
Helix 69	AH6	C	260	276	Right-handed alpha
Helix 70	AH7	C	280	290	Right-handed alpha
Helix 71	AH8	C	299	306	Right-handed alpha
Helix 72	AH9	C	310	320	Right-handed alpha
Helix 73	AI1	C	403	415	Right-handed alpha
Helix 74	AI2	C	431	446	Right-handed alpha
Helix 75	AI3	C	447	455	Right-handed alpha
Helix 76	AI4	C	547	562	Right-handed alpha
Helix 77	AI5	C	562	575	Right-handed alpha
Helix 78	AI6	C	581	589	Right-handed alpha
Helix 79	AI7	C	594	609	Right-handed alpha
Helix 80	AI8	C	615	630	Right-handed alpha
Helix 81	AI9	C	737	755	Right-handed alpha
Helix 82	AJ1	H	176	185	Right-handed alpha
Helix 83	AJ2	H	246	257	Right-handed alpha
Helix 84	AJ3	H	272	286	Right-handed alpha
Helix 85	AJ4	H	294	299	Right-handed alpha
Helix 86	AJ5	H	304	316	Right-handed alpha
Helix 87	AJ6	H	336	344	Right-handed alpha
Helix 88	AJ7	H	362	380	Right-handed alpha
Helix 89	AJ8	H	382	400	Right-handed alpha
Helix 90	AJ9	H	485	493	Right-handed alpha
Helix 91	AK1	H	494	497	Right-handed 310
Helix 92	AK2	H	498	517	Right-handed alpha
Helix 93	AK3	H	540	557	Right-handed alpha
Helix 94	AK4	H	559	581	Right-handed alpha
Helix 95	AK5	H	592	599	Right-handed alpha
Helix 96	AK6	H	604	617	Right-handed alpha
Helix 97	AK7	I	1	5	Right-handed 310
Helix 98	AK8	I	11	16	Right-handed alpha
Helix 99	AK9	I	17	19	Right-handed 310
Helix 100	AL1	I	33	46	Right-handed alpha
Helix 101	AL2	I	53	59	Right-handed alpha
Helix 102	AL3	I	66	70	Right-handed 310
Helix 103	AL4	I	80	94	Right-handed alpha
Helix 104	AL5	I	95	109	Right-handed alpha
Helix 105	AL6	I	116	121	Right-handed 310
Helix 106	AL7	I	134	151	Right-handed alpha
Helix 107	AL8	I	157	169	Right-handed alpha
Helix 108	AL9	I	215	224	Right-handed alpha
Helix 109	AM1	I	247	266	Right-handed alpha
Helix 110	AM2	I	280	286	Right-handed alpha
Helix 111	AM3	I	310	326	Right-handed alpha
Helix 112	AM4	I	328	343	Right-handed alpha
Helix 113	AM5	I	373	378	Right-handed 310
Helix 114	AM6	I	398	409	Right-handed alpha
Helix 115	AM7	I	432	451	Right-handed alpha
Helix 116	AM8	I	496	514	Right-handed alpha
Helix 117	AM9	I	518	537	Right-handed alpha
Helix 118	AN1	I	543	552	Right-handed alpha
Helix 119	AN2	I	587	595	Right-handed alpha
Helix 120	AN3	J	43	46	Right-handed 310
Helix 121	AN4	J	47	54	Right-handed alpha
Helix 122	AN5	J	92	102	Right-handed alpha
Helix 123	AN6	J	106	115	Right-handed alpha
Helix 124	AN7	J	118	125	Right-handed alpha

There are 35 sheets in PDB entry 8Z9H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	87	89	anti-parallel
Strand 3	A	94	101	anti-parallel
Strand 4	A	115	120	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	585	587	anti-parallel
Strand 3	B	460	462	anti-parallel
Strand 4	B	294	303	anti-parallel
Strand 5	B	423	430	anti-parallel
Strand 6	B	416	419	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	585	587	anti-parallel
Strand 3	B	460	462	anti-parallel
Strand 4	B	294	303	anti-parallel
Strand 5	B	453	454	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	423	431	anti-parallel
Strand 3	A	442	451	anti-parallel
Strand 4	A	409	417	first strand
Strand 5	A	290	291	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	264	first strand
Strand 2	A	464	468	anti-parallel
Strand 3	A	473	476	anti-parallel
Strand 4	A	442	451	anti-parallel
Strand 5	A	423	431	anti-parallel
Strand 6	A	479	484	first strand

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	323	first strand
Strand 2	B	353	356	anti-parallel
Strand 3	B	362	364	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	406	first strand
Strand 2	A	434	435	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	530	first strand
Strand 2	A	535	539	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	132	133	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	175	first strand
Strand 2	B	213	215	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	245	first strand
Strand 2	B	225	230	anti-parallel
Strand 3	B	345	348	parallel
Strand 4	B	384	387	anti-parallel
Strand 5	B	380	381	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	470	first strand
Strand 2	B	473	475	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	608	611	first strand
Strand 2	B	619	622	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	633	634	first strand
Strand 2	C	67	69	anti-parallel
Strand 3	C	97	99	anti-parallel
Strand 4	C	85	86	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	250	251	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	154	first strand
Strand 2	C	224	229	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	298	first strand
Strand 2	C	293	294	anti-parallel
Strand 3	C	534	535	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	330	first strand
Strand 2	C	333	340	anti-parallel
Strand 3	C	369	376	anti-parallel
Strand 4	C	379	386	anti-parallel
Strand 5	C	389	396	anti-parallel
Strand 6	C	481	483	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	347	first strand
Strand 2	C	363	366	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	457	first strand
Strand 2	C	477	478	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	501	first strand
Strand 2	C	505	510	anti-parallel
Strand 3	C	513	518	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	645	647	first strand
Strand 2	C	654	656	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	664	666	first strand
Strand 2	C	670	673	anti-parallel
Strand 3	C	676	680	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	694	695	first strand
Strand 2	C	725	729	anti-parallel
Strand 3	C	718	722	anti-parallel
Strand 4	C	702	703	parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	210	211	first strand
Strand 2	H	585	587	anti-parallel
Strand 3	I	460	462	anti-parallel
Strand 4	I	294	301	anti-parallel
Strand 5	I	423	430	anti-parallel
Strand 6	I	415	420	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	240	242	first strand
Strand 2	H	423	431	anti-parallel
Strand 3	H	442	451	anti-parallel
Strand 4	H	472	484	anti-parallel
Strand 5	H	463	469	anti-parallel
Strand 6	H	260	264	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	240	242	first strand
Strand 2	H	423	431	anti-parallel
Strand 3	H	409	417	anti-parallel
Strand 4	H	290	291	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	322	323	first strand
Strand 2	I	353	356	anti-parallel
Strand 3	I	362	364	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	526	531	first strand
Strand 2	H	534	539	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	124	126	first strand
Strand 2	I	131	133	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	174	175	first strand
Strand 2	I	213	214	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	242	245	first strand
Strand 2	I	225	230	anti-parallel
Strand 3	I	346	347	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	380	381	first strand
Strand 2	I	384	385	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	467	470	first strand
Strand 2	I	473	476	anti-parallel
Strand 3	I	479	482	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	58	59	first strand
Strand 2	J	89	90	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z9H

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z9H