Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z9L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z9L entry

There are 3 chains in PDB entry 8Z9L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PRO 18	ASP 615
F	PRO 332	CYS 525
I	PRO 18	GLU 457

There are141 helices in PDB entry 8Z9L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	20	53	Right-handed alpha
Helix 2	AA2	B	55	81	Right-handed alpha
Helix 3	AA3	B	91	102	Right-handed alpha
Helix 4	AA4	B	109	130	Right-handed alpha
Helix 5	AA5	B	147	155	Right-handed alpha
Helix 6	AA6	B	157	194	Right-handed alpha
Helix 7	AA7	B	198	205	Right-handed alpha
Helix 8	AA8	B	220	252	Right-handed alpha
Helix 9	AA9	B	265	268	Right-handed 310
Helix 10	AB1	B	275	277	Right-handed 310
Helix 11	AB2	B	278	283	Right-handed alpha
Helix 12	AB3	B	293	300	Right-handed alpha
Helix 13	AB4	B	303	319	Right-handed alpha
Helix 14	AB5	B	324	331	Right-handed alpha
Helix 15	AB6	B	365	386	Right-handed alpha
Helix 16	AB7	B	387	388	Right-handed 310
Helix 17	AB8	B	389	393	Right-handed 310
Helix 18	AB9	B	399	414	Right-handed alpha
Helix 19	AC1	B	414	422	Right-handed alpha
Helix 20	AC2	B	431	466	Right-handed alpha
Helix 21	AC3	B	469	471	Right-handed 310
Helix 22	AC4	B	472	484	Right-handed alpha
Helix 23	AC5	B	499	502	Right-handed 310
Helix 24	AC6	B	503	508	Right-handed alpha
Helix 25	AC7	B	512	533	Right-handed alpha
Helix 26	AC8	B	538	542	Right-handed 310
Helix 27	AC9	B	547	561	Right-handed alpha
Helix 28	AD1	B	565	575	Right-handed alpha
Helix 29	AD2	B	581	588	Right-handed alpha
Helix 30	AD3	B	588	600	Right-handed alpha
Helix 31	AD4	F	337	343	Right-handed alpha
Helix 32	AD5	F	365	372	Right-handed alpha
Helix 33	AD6	F	405	410	Right-handed 310
Helix 34	AD7	F	416	422	Right-handed alpha
Helix 35	AD8	F	438	443	Right-handed alpha
Helix 36	AD9	I	20	53	Right-handed alpha
Helix 37	AE1	I	55	81	Right-handed alpha
Helix 38	AE2	I	91	103	Right-handed alpha
Helix 39	AE3	I	109	130	Right-handed alpha
Helix 40	AE4	I	147	155	Right-handed alpha
Helix 41	AE5	I	157	194	Right-handed alpha
Helix 42	AE6	I	198	205	Right-handed alpha
Helix 43	AE7	I	218	252	Right-handed alpha
Helix 44	AE8	I	265	268	Right-handed 310
Helix 45	AE9	I	275	277	Right-handed 310
Helix 46	AF1	I	278	283	Right-handed alpha
Helix 47	AF2	I	293	300	Right-handed alpha
Helix 48	AF3	I	303	319	Right-handed alpha
Helix 49	AF4	I	324	331	Right-handed alpha
Helix 50	AF5	I	365	386	Right-handed alpha
Helix 51	AF6	I	389	393	Right-handed 310
Helix 52	AF7	I	399	414	Right-handed alpha
Helix 53	AF8	I	414	422	Right-handed alpha
Helix 54	AF9	I	431	466	Right-handed alpha
Helix 55	AG1	I	469	471	Right-handed 310
Helix 56	AG2	I	472	484	Right-handed alpha
Helix 57	AG3	I	499	502	Right-handed 310
Helix 58	AG4	I	503	508	Right-handed alpha
Helix 59	AG5	I	512	533	Right-handed alpha
Helix 60	AG6	I	547	561	Right-handed alpha
Helix 61	AG7	I	565	575	Right-handed alpha
Helix 62	AG8	I	581	588	Right-handed alpha
Helix 63	AG9	I	588	599	Right-handed alpha
Helix 64	AH1	I	600	602	Right-handed 310
Helix 65	AH2	L	337	343	Right-handed alpha
Helix 66	AH3	L	349	353	Right-handed 310
Helix 67	AH4	L	364	372	Right-handed alpha
Helix 68	AH5	L	383	389	Right-handed alpha
Helix 69	AH6	L	405	410	Right-handed 310
Helix 70	AH7	L	416	422	Right-handed alpha
Helix 71	AH8	L	438	443	Right-handed alpha
Helix 72	AH9	O	20	53	Right-handed alpha
Helix 73	AI1	O	55	81	Right-handed alpha
Helix 74	AI2	O	91	102	Right-handed alpha
Helix 75	AI3	O	109	130	Right-handed alpha
Helix 76	AI4	O	147	155	Right-handed alpha
Helix 77	AI5	O	157	194	Right-handed alpha
Helix 78	AI6	O	199	205	Right-handed alpha
Helix 79	AI7	O	218	252	Right-handed alpha
Helix 80	AI8	O	265	268	Right-handed 310
Helix 81	AI9	O	275	279	Right-handed 310
Helix 82	AJ1	O	293	300	Right-handed alpha
Helix 83	AJ2	O	303	319	Right-handed alpha
Helix 84	AJ3	O	324	331	Right-handed alpha
Helix 85	AJ4	O	365	386	Right-handed alpha
Helix 86	AJ5	O	387	388	Right-handed 310
Helix 87	AJ6	O	389	393	Right-handed 310
Helix 88	AJ7	O	399	414	Right-handed alpha
Helix 89	AJ8	O	414	422	Right-handed alpha
Helix 90	AJ9	O	431	466	Right-handed alpha
Helix 91	AK1	O	469	471	Right-handed 310
Helix 92	AK2	O	472	484	Right-handed alpha
Helix 93	AK3	O	499	502	Right-handed 310
Helix 94	AK4	O	503	508	Right-handed alpha
Helix 95	AK5	O	512	533	Right-handed alpha
Helix 96	AK6	O	547	561	Right-handed alpha
Helix 97	AK7	O	565	575	Right-handed alpha
Helix 98	AK8	O	581	588	Right-handed alpha
Helix 99	AK9	O	588	599	Right-handed alpha
Helix 100	AL1	R	337	343	Right-handed alpha
Helix 101	AL2	R	365	372	Right-handed alpha
Helix 102	AL3	R	385	389	Right-handed 310
Helix 103	AL4	R	405	410	Right-handed 310
Helix 104	AL5	R	416	422	Right-handed alpha
Helix 105	AL6	R	438	443	Right-handed alpha
Helix 106	AL7	U	20	53	Right-handed alpha
Helix 107	AL8	U	55	81	Right-handed alpha
Helix 108	AL9	U	90	102	Right-handed alpha
Helix 109	AM1	U	109	130	Right-handed alpha
Helix 110	AM2	U	147	155	Right-handed alpha
Helix 111	AM3	U	157	193	Right-handed alpha
Helix 112	AM4	U	194	196	Right-handed 310
Helix 113	AM5	U	198	205	Right-handed alpha
Helix 114	AM6	U	206	208	Right-handed 310
Helix 115	AM7	U	220	252	Right-handed alpha
Helix 116	AM8	U	265	268	Right-handed 310
Helix 117	AM9	U	275	277	Right-handed 310
Helix 118	AN1	U	278	283	Right-handed alpha
Helix 119	AN2	U	293	300	Right-handed alpha
Helix 120	AN3	U	303	319	Right-handed alpha
Helix 121	AN4	U	324	331	Right-handed alpha
Helix 122	AN5	U	365	386	Right-handed alpha
Helix 123	AN6	U	387	388	Right-handed 310
Helix 124	AN7	U	389	393	Right-handed 310
Helix 125	AN8	U	399	414	Right-handed alpha
Helix 126	AN9	U	414	422	Right-handed alpha
Helix 127	AO1	U	431	466	Right-handed alpha
Helix 128	AO2	U	469	471	Right-handed 310
Helix 129	AO3	U	472	484	Right-handed alpha
Helix 130	AO4	U	499	502	Right-handed 310
Helix 131	AO5	U	503	508	Right-handed alpha
Helix 132	AO6	U	512	533	Right-handed alpha
Helix 133	AO7	U	547	561	Right-handed alpha
Helix 134	AO8	U	565	575	Right-handed alpha
Helix 135	AO9	U	581	588	Right-handed alpha
Helix 136	AP1	U	588	599	Right-handed alpha
Helix 137	AP2	X	337	343	Right-handed alpha
Helix 138	AP3	X	388	392	Right-handed 310
Helix 139	AP4	X	405	409	Right-handed 310
Helix 140	AP5	X	416	422	Right-handed alpha
Helix 141	AP6	X	438	443	Right-handed alpha

There are 24 sheets in PDB entry 8Z9L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	133	first strand
Strand 2	B	141	143	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	263	first strand
Strand 2	B	487	488	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	334	first strand
Strand 2	B	355	362	parallel
Strand 3	B	347	352	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	354	358	first strand
Strand 2	F	394	403	anti-parallel
Strand 3	F	507	516	anti-parallel
Strand 4	F	431	437	anti-parallel
Strand 5	F	376	380	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	452	454	first strand
Strand 2	F	492	494	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	473	474	first strand
Strand 2	F	488	489	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	131	133	first strand
Strand 2	I	141	143	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	262	263	first strand
Strand 2	I	487	488	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	347	352	first strand
Strand 2	I	355	359	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	354	358	first strand
Strand 2	L	394	403	anti-parallel
Strand 3	L	507	516	anti-parallel
Strand 4	L	431	437	anti-parallel
Strand 5	L	376	380	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	452	454	first strand
Strand 2	L	492	494	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	473	474	first strand
Strand 2	L	488	489	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	131	133	first strand
Strand 2	O	141	143	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	262	263	first strand
Strand 2	O	487	488	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	347	350	first strand
Strand 2	O	356	359	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	354	358	first strand
Strand 2	R	394	403	anti-parallel
Strand 3	R	507	516	anti-parallel
Strand 4	R	432	437	anti-parallel
Strand 5	R	376	379	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	452	454	first strand
Strand 2	R	492	494	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	473	474	first strand
Strand 2	R	488	489	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	131	133	first strand
Strand 2	U	141	143	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	262	263	first strand
Strand 2	U	487	488	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	347	352	first strand
Strand 2	U	355	359	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	354	358	first strand
Strand 2	X	395	403	anti-parallel
Strand 3	X	507	515	anti-parallel
Strand 4	X	432	437	anti-parallel
Strand 5	X	378	379	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	452	454	first strand
Strand 2	X	492	494	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	473	474	first strand
Strand 2	X	488	489	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z9L

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z9L