Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z9M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z9M entry

There are 4 chains in PDB entry 8Z9M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LYS 376	GLY 824
D	PHE 8	GLU 1215
A	LYS 376	GLY 824
B	PHE 8	GLU 1215

There are 72 helices in PDB entry 8Z9M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	383	392	Right-handed alpha
Helix 2	AA2	C	399	408	Right-handed alpha
Helix 3	AA3	C	413	427	Right-handed alpha
Helix 4	AA4	C	437	452	Right-handed alpha
Helix 5	AA5	C	532	543	Right-handed alpha
Helix 6	AA6	C	561	565	Right-handed 310
Helix 7	AA7	C	586	595	Right-handed alpha
Helix 8	AA8	C	637	645	Right-handed alpha
Helix 9	AA9	C	716	720	Right-handed 310
Helix 10	AB1	C	734	748	Right-handed alpha
Helix 11	AB2	C	751	754	Right-handed 310
Helix 12	AB3	C	755	776	Right-handed alpha
Helix 13	AB4	D	20	24	Right-handed 310
Helix 14	AB5	D	426	430	Right-handed 310
Helix 15	AB6	D	843	847	Right-handed 310
Helix 16	AB7	D	848	861	Right-handed alpha
Helix 17	AB8	D	871	875	Right-handed 310
Helix 18	AB9	D	880	892	Right-handed alpha
Helix 19	AC1	D	895	903	Right-handed alpha
Helix 20	AC2	D	908	921	Right-handed alpha
Helix 21	AC3	D	923	941	Right-handed alpha
Helix 22	AC4	D	964	971	Right-handed 310
Helix 23	AC5	D	972	990	Right-handed alpha
Helix 24	AC6	D	993	1007	Right-handed alpha
Helix 25	AC7	D	1010	1018	Right-handed alpha
Helix 26	AC8	D	1026	1040	Right-handed alpha
Helix 27	AC9	D	1047	1061	Right-handed alpha
Helix 28	AD1	D	1062	1074	Right-handed alpha
Helix 29	AD2	D	1076	1086	Right-handed alpha
Helix 30	AD3	D	1088	1099	Right-handed alpha
Helix 31	AD4	D	1104	1117	Right-handed alpha
Helix 32	AD5	D	1123	1134	Right-handed alpha
Helix 33	AD6	D	1136	1147	Right-handed alpha
Helix 34	AD7	D	1151	1164	Right-handed alpha
Helix 35	AD8	D	1172	1189	Right-handed alpha
Helix 36	AD9	D	1192	1204	Right-handed alpha
Helix 37	AE1	D	1207	1215	Right-handed alpha
Helix 38	AE2	A	383	391	Right-handed alpha
Helix 39	AE3	A	399	409	Right-handed alpha
Helix 40	AE4	A	413	426	Right-handed alpha
Helix 41	AE5	A	437	450	Right-handed alpha
Helix 42	AE6	A	531	543	Right-handed alpha
Helix 43	AE7	A	561	565	Right-handed 310
Helix 44	AE8	A	587	595	Right-handed alpha
Helix 45	AE9	A	637	644	Right-handed alpha
Helix 46	AF1	A	733	747	Right-handed alpha
Helix 47	AF2	A	751	776	Right-handed alpha
Helix 48	AF3	B	20	24	Right-handed 310
Helix 49	AF4	B	426	430	Right-handed 310
Helix 50	AF5	B	480	484	Right-handed 310
Helix 51	AF6	B	843	847	Right-handed 310
Helix 52	AF7	B	848	861	Right-handed alpha
Helix 53	AF8	B	871	875	Right-handed 310
Helix 54	AF9	B	880	893	Right-handed alpha
Helix 55	AG1	B	895	903	Right-handed alpha
Helix 56	AG2	B	908	921	Right-handed alpha
Helix 57	AG3	B	923	941	Right-handed alpha
Helix 58	AG4	B	972	990	Right-handed alpha
Helix 59	AG5	B	993	1008	Right-handed alpha
Helix 60	AG6	B	1009	1018	Right-handed alpha
Helix 61	AG7	B	1026	1040	Right-handed alpha
Helix 62	AG8	B	1047	1060	Right-handed alpha
Helix 63	AG9	B	1063	1074	Right-handed alpha
Helix 64	AH1	B	1075	1086	Right-handed alpha
Helix 65	AH2	B	1088	1099	Right-handed alpha
Helix 66	AH3	B	1104	1117	Right-handed alpha
Helix 67	AH4	B	1123	1135	Right-handed alpha
Helix 68	AH5	B	1136	1147	Right-handed alpha
Helix 69	AH6	B	1149	1164	Right-handed alpha
Helix 70	AH7	B	1172	1191	Right-handed alpha
Helix 71	AH8	B	1192	1204	Right-handed alpha
Helix 72	AH9	B	1207	1215	Right-handed alpha

There are 39 sheets in PDB entry 8Z9M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	474	475	first strand
Strand 2	C	377	381	parallel
Strand 3	C	498	505	parallel
Strand 4	C	520	522	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	474	475	first strand
Strand 2	C	377	381	parallel
Strand 3	C	498	505	parallel
Strand 4	C	729	730	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	583	first strand
Strand 2	C	569	574	anti-parallel
Strand 3	C	600	606	anti-parallel
Strand 4	C	548	551	anti-parallel
Strand 5	C	812	815	anti-parallel
Strand 6	C	818	821	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	612	618	first strand
Strand 2	C	654	660	anti-parallel
Strand 3	C	721	727	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	15	first strand
Strand 2	D	818	821	anti-parallel
Strand 3	D	809	813	anti-parallel
Strand 4	D	798	803	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	29	first strand
Strand 2	D	34	38	anti-parallel
Strand 3	D	43	47	anti-parallel
Strand 4	D	53	57	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	69	first strand
Strand 2	D	86	90	anti-parallel
Strand 3	D	94	98	anti-parallel
Strand 4	D	105	110	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	121	first strand
Strand 2	D	131	136	anti-parallel
Strand 3	D	140	145	anti-parallel
Strand 4	D	153	156	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	166	first strand
Strand 2	D	174	178	anti-parallel
Strand 3	D	182	185	anti-parallel
Strand 4	D	199	201	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	252	first strand
Strand 2	D	259	263	anti-parallel
Strand 3	D	267	272	anti-parallel
Strand 4	D	277	283	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	296	first strand
Strand 2	D	302	307	anti-parallel
Strand 3	D	312	317	anti-parallel
Strand 4	D	341	346	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	358	363	first strand
Strand 2	D	370	375	anti-parallel
Strand 3	D	380	388	anti-parallel
Strand 4	D	451	460	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	409	410	first strand
Strand 2	D	413	414	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	469	472	first strand
Strand 2	D	488	491	anti-parallel
Strand 3	D	496	500	anti-parallel
Strand 4	D	507	512	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	518	523	first strand
Strand 2	D	528	534	anti-parallel
Strand 3	D	545	551	anti-parallel
Strand 4	D	557	559	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	571	576	first strand
Strand 2	D	582	587	anti-parallel
Strand 3	D	593	596	anti-parallel
Strand 4	D	604	605	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	615	618	first strand
Strand 2	D	677	682	anti-parallel
Strand 3	D	688	694	anti-parallel
Strand 4	D	697	704	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	713	719	first strand
Strand 2	D	722	727	anti-parallel
Strand 3	D	731	736	anti-parallel
Strand 4	D	744	746	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	752	757	first strand
Strand 2	D	765	770	anti-parallel
Strand 3	D	773	778	anti-parallel
Strand 4	D	786	789	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	381	first strand
Strand 2	A	498	505	parallel
Strand 3	A	520	522	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	381	first strand
Strand 2	A	498	505	parallel
Strand 3	A	729	730	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	412	first strand
Strand 2	A	476	477	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	580	583	first strand
Strand 2	A	569	574	anti-parallel
Strand 3	A	600	606	anti-parallel
Strand 4	A	548	551	anti-parallel
Strand 5	A	812	815	anti-parallel
Strand 6	A	818	821	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	612	618	first strand
Strand 2	A	654	660	anti-parallel
Strand 3	A	721	727	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	15	first strand
Strand 2	B	818	822	anti-parallel
Strand 3	B	808	813	anti-parallel
Strand 4	B	798	803	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	29	first strand
Strand 2	B	34	38	anti-parallel
Strand 3	B	43	47	anti-parallel
Strand 4	B	53	57	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	69	first strand
Strand 2	B	85	90	anti-parallel
Strand 3	B	94	99	anti-parallel
Strand 4	B	104	110	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	121	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	140	145	anti-parallel
Strand 4	B	154	156	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	166	first strand
Strand 2	B	174	178	anti-parallel
Strand 3	B	182	185	anti-parallel
Strand 4	B	199	201	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	252	first strand
Strand 2	B	259	263	anti-parallel
Strand 3	B	267	272	anti-parallel
Strand 4	B	278	283	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	296	first strand
Strand 2	B	302	307	anti-parallel
Strand 3	B	312	317	anti-parallel
Strand 4	B	341	346	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	363	first strand
Strand 2	B	370	375	anti-parallel
Strand 3	B	380	388	anti-parallel
Strand 4	B	451	460	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	410	first strand
Strand 2	B	413	414	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	472	first strand
Strand 2	B	488	491	anti-parallel
Strand 3	B	496	500	anti-parallel
Strand 4	B	507	512	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	523	first strand
Strand 2	B	528	534	anti-parallel
Strand 3	B	545	551	anti-parallel
Strand 4	B	557	559	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	571	576	first strand
Strand 2	B	582	587	anti-parallel
Strand 3	B	593	596	anti-parallel
Strand 4	B	602	605	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	615	618	first strand
Strand 2	B	677	682	anti-parallel
Strand 3	B	688	694	anti-parallel
Strand 4	B	697	704	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	716	719	first strand
Strand 2	B	722	725	anti-parallel
Strand 3	B	731	736	anti-parallel
Strand 4	B	742	746	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	755	757	first strand
Strand 2	B	765	770	anti-parallel
Strand 3	B	773	778	anti-parallel
Strand 4	B	784	789	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z9M

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z9M