Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z9Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z9Q entry

There are 2 chains in PDB entry 8Z9Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	TYR 622
B	MET 1	LYS 703

There are 71 helices in PDB entry 8Z9Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	20	Right-handed alpha
Helix 2	AA2	A	27	47	Right-handed alpha
Helix 3	AA3	A	64	74	Right-handed alpha
Helix 4	AA4	A	75	77	Right-handed 310
Helix 5	AA5	A	80	84	Right-handed 310
Helix 6	AA6	A	126	133	Right-handed alpha
Helix 7	AA7	A	134	146	Right-handed alpha
Helix 8	AA8	A	148	155	Right-handed alpha
Helix 9	AA9	A	157	167	Right-handed alpha
Helix 10	AB1	A	176	184	Right-handed alpha
Helix 11	AB2	A	185	187	Right-handed 310
Helix 12	AB3	A	233	235	Right-handed 310
Helix 13	AB4	A	246	257	Right-handed alpha
Helix 14	AB5	A	270	272	Right-handed 310
Helix 15	AB6	A	273	286	Right-handed alpha
Helix 16	AB7	A	296	302	Right-handed alpha
Helix 17	AB8	A	305	316	Right-handed alpha
Helix 18	AB9	A	335	345	Right-handed alpha
Helix 19	AC1	A	362	381	Right-handed alpha
Helix 20	AC2	A	382	400	Right-handed alpha
Helix 21	AC3	A	485	493	Right-handed alpha
Helix 22	AC4	A	494	497	Right-handed 310
Helix 23	AC5	A	498	517	Right-handed alpha
Helix 24	AC6	A	540	557	Right-handed alpha
Helix 25	AC7	A	559	581	Right-handed alpha
Helix 26	AC8	A	592	599	Right-handed alpha
Helix 27	AC9	A	604	616	Right-handed alpha
Helix 28	AD1	B	1	5	Right-handed 310
Helix 29	AD2	B	11	16	Right-handed alpha
Helix 30	AD3	B	17	19	Right-handed 310
Helix 31	AD4	B	33	47	Right-handed alpha
Helix 32	AD5	B	53	58	Right-handed alpha
Helix 33	AD6	B	66	70	Right-handed 310
Helix 34	AD7	B	80	95	Right-handed alpha
Helix 35	AD8	B	95	108	Right-handed alpha
Helix 36	AD9	B	108	113	Right-handed alpha
Helix 37	AE1	B	114	121	Right-handed 310
Helix 38	AE2	B	134	151	Right-handed alpha
Helix 39	AE3	B	157	169	Right-handed alpha
Helix 40	AE4	B	215	225	Right-handed alpha
Helix 41	AE5	B	247	266	Right-handed alpha
Helix 42	AE6	B	280	286	Right-handed alpha
Helix 43	AE7	B	310	326	Right-handed alpha
Helix 44	AE8	B	328	344	Right-handed alpha
Helix 45	AE9	B	373	378	Right-handed 310
Helix 46	AF1	B	396	409	Right-handed alpha
Helix 47	AF2	B	432	449	Right-handed alpha
Helix 48	AF3	B	496	514	Right-handed alpha
Helix 49	AF4	B	518	537	Right-handed alpha
Helix 50	AF5	B	543	552	Right-handed alpha
Helix 51	AF6	B	558	562	Right-handed 310
Helix 52	AF7	B	587	595	Right-handed alpha
Helix 53	AF8	B	648	662	Right-handed alpha
Helix 54	AF9	B	666	671	Right-handed 310
Helix 55	AG1	B	679	694	Right-handed alpha
Helix 56	AG2	B	698	708	Right-handed alpha
Helix 57	AG3	C	11	27	Right-handed alpha
Helix 58	AG4	C	27	32	Right-handed alpha
Helix 59	AG5	C	33	36	Right-handed 310
Helix 60	AG6	C	37	42	Right-handed alpha
Helix 61	AG7	C	56	63	Right-handed alpha
Helix 62	AG8	C	102	111	Right-handed alpha
Helix 63	AG9	C	115	123	Right-handed alpha
Helix 64	AH1	C	126	135	Right-handed alpha
Helix 65	AH2	C	166	176	Right-handed alpha
Helix 66	AH3	C	181	187	Right-handed alpha
Helix 67	AH4	C	191	201	Right-handed alpha
Helix 68	AH5	C	202	204	Right-handed 310
Helix 69	AH6	C	208	221	Right-handed alpha
Helix 70	AH7	C	234	239	Right-handed alpha
Helix 71	AH8	C	240	245	Right-handed alpha

There are 14 sheets in PDB entry 8Z9Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	87	89	anti-parallel
Strand 3	A	94	100	anti-parallel
Strand 4	A	115	119	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	585	587	anti-parallel
Strand 3	B	460	462	anti-parallel
Strand 4	B	294	301	anti-parallel
Strand 5	B	423	430	anti-parallel
Strand 6	B	416	420	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	238	first strand
Strand 2	A	442	451	anti-parallel
Strand 3	A	423	431	anti-parallel
Strand 4	A	472	484	first strand
Strand 5	A	463	469	anti-parallel
Strand 6	A	258	264	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	423	431	anti-parallel
Strand 3	A	442	451	anti-parallel
Strand 4	A	409	417	first strand
Strand 5	A	290	291	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	323	first strand
Strand 2	B	353	356	anti-parallel
Strand 3	B	362	364	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	531	first strand
Strand 2	A	534	539	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	126	first strand
Strand 2	B	131	133	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	230	first strand
Strand 2	B	242	245	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	381	first strand
Strand 2	B	384	385	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	470	first strand
Strand 2	B	473	476	anti-parallel
Strand 3	B	480	482	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	69	first strand
Strand 2	C	97	99	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	C	82	83	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	143	first strand
Strand 2	C	249	253	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	154	first strand
Strand 2	C	224	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z9Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z9Q