Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z9R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Z9R entry

There are 11 chains in PDB entry 8Z9R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	TYR 622
B	MET 1	PHE 710
C	GLU 8	ARG 755
D	A 1	G 12
E	U 14	U 17
F	G 5	U 17
G	G 2	A 10
H	SER 174	TYR 622
I	MET 1	GLU 693
J	GLU 10	ASN 254
K	G 2	A 10

There are141 helices in PDB entry 8Z9R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	16	Right-handed alpha
Helix 2	AA2	A	27	46	Right-handed alpha
Helix 3	AA3	A	64	75	Right-handed alpha
Helix 4	AA4	A	126	133	Right-handed alpha
Helix 5	AA5	A	134	155	Right-handed alpha
Helix 6	AA6	A	157	167	Right-handed alpha
Helix 7	AA7	A	177	184	Right-handed alpha
Helix 8	AA8	A	185	187	Right-handed 310
Helix 9	AA9	A	233	237	Right-handed 310
Helix 10	AB1	A	246	257	Right-handed alpha
Helix 11	AB2	A	270	272	Right-handed 310
Helix 12	AB3	A	273	287	Right-handed alpha
Helix 13	AB4	A	296	302	Right-handed alpha
Helix 14	AB5	A	304	316	Right-handed alpha
Helix 15	AB6	A	335	345	Right-handed alpha
Helix 16	AB7	A	362	380	Right-handed alpha
Helix 17	AB8	A	382	401	Right-handed alpha
Helix 18	AB9	A	485	492	Right-handed alpha
Helix 19	AC1	A	493	497	Right-handed 310
Helix 20	AC2	A	498	516	Right-handed alpha
Helix 21	AC3	A	540	556	Right-handed alpha
Helix 22	AC4	A	559	580	Right-handed alpha
Helix 23	AC5	A	594	599	Right-handed alpha
Helix 24	AC6	A	604	617	Right-handed alpha
Helix 25	AC7	B	1	5	Right-handed 310
Helix 26	AC8	B	13	19	Right-handed 310
Helix 27	AC9	B	33	47	Right-handed alpha
Helix 28	AD1	B	53	58	Right-handed alpha
Helix 29	AD2	B	66	70	Right-handed 310
Helix 30	AD3	B	80	94	Right-handed alpha
Helix 31	AD4	B	95	108	Right-handed alpha
Helix 32	AD5	B	109	113	Right-handed 310
Helix 33	AD6	B	114	121	Right-handed 310
Helix 34	AD7	B	134	151	Right-handed alpha
Helix 35	AD8	B	157	169	Right-handed alpha
Helix 36	AD9	B	216	224	Right-handed alpha
Helix 37	AE1	B	247	266	Right-handed alpha
Helix 38	AE2	B	277	286	Right-handed alpha
Helix 39	AE3	B	310	325	Right-handed alpha
Helix 40	AE4	B	328	344	Right-handed alpha
Helix 41	AE5	B	373	378	Right-handed 310
Helix 42	AE6	B	396	409	Right-handed alpha
Helix 43	AE7	B	432	450	Right-handed alpha
Helix 44	AE8	B	456	459	Right-handed 310
Helix 45	AE9	B	486	491	Right-handed 310
Helix 46	AF1	B	496	514	Right-handed alpha
Helix 47	AF2	B	518	537	Right-handed alpha
Helix 48	AF3	B	543	552	Right-handed alpha
Helix 49	AF4	B	558	562	Right-handed 310
Helix 50	AF5	B	575	583	Right-handed alpha
Helix 51	AF6	B	587	595	Right-handed alpha
Helix 52	AF7	B	646	666	Right-handed alpha
Helix 53	AF8	B	667	671	Right-handed 310
Helix 54	AF9	B	679	694	Right-handed alpha
Helix 55	AG1	B	698	708	Right-handed alpha
Helix 56	AG2	C	9	27	Right-handed alpha
Helix 57	AG3	C	34	36	Right-handed 310
Helix 58	AG4	C	37	42	Right-handed alpha
Helix 59	AG5	C	52	55	Right-handed 310
Helix 60	AG6	C	56	62	Right-handed alpha
Helix 61	AG7	C	102	109	Right-handed alpha
Helix 62	AG8	C	115	123	Right-handed alpha
Helix 63	AG9	C	123	136	Right-handed alpha
Helix 64	AH1	C	163	165	Right-handed 310
Helix 65	AH2	C	166	176	Right-handed alpha
Helix 66	AH3	C	177	180	Right-handed 310
Helix 67	AH4	C	181	187	Right-handed alpha
Helix 68	AH5	C	189	204	Right-handed alpha
Helix 69	AH6	C	208	220	Right-handed alpha
Helix 70	AH7	C	237	239	Right-handed 310
Helix 71	AH8	C	240	245	Right-handed alpha
Helix 72	AH9	C	260	276	Right-handed alpha
Helix 73	AI1	C	280	290	Right-handed alpha
Helix 74	AI2	C	299	306	Right-handed alpha
Helix 75	AI3	C	310	320	Right-handed alpha
Helix 76	AI4	C	403	415	Right-handed alpha
Helix 77	AI5	C	431	446	Right-handed alpha
Helix 78	AI6	C	448	455	Right-handed alpha
Helix 79	AI7	C	547	562	Right-handed alpha
Helix 80	AI8	C	562	576	Right-handed alpha
Helix 81	AI9	C	581	589	Right-handed alpha
Helix 82	AJ1	C	594	609	Right-handed alpha
Helix 83	AJ2	C	615	630	Right-handed alpha
Helix 84	AJ3	C	706	714	Right-handed alpha
Helix 85	AJ4	C	737	754	Right-handed alpha
Helix 86	AJ5	H	177	185	Right-handed alpha
Helix 87	AJ6	H	246	257	Right-handed alpha
Helix 88	AJ7	H	272	286	Right-handed alpha
Helix 89	AJ8	H	294	298	Right-handed 310
Helix 90	AJ9	H	304	317	Right-handed alpha
Helix 91	AK1	H	335	344	Right-handed alpha
Helix 92	AK2	H	362	380	Right-handed alpha
Helix 93	AK3	H	382	403	Right-handed alpha
Helix 94	AK4	H	484	493	Right-handed alpha
Helix 95	AK5	H	494	497	Right-handed 310
Helix 96	AK6	H	498	515	Right-handed alpha
Helix 97	AK7	H	540	557	Right-handed alpha
Helix 98	AK8	H	559	581	Right-handed alpha
Helix 99	AK9	H	592	599	Right-handed alpha
Helix 100	AL1	H	604	617	Right-handed alpha
Helix 101	AL2	I	1	5	Right-handed 310
Helix 102	AL3	I	11	16	Right-handed alpha
Helix 103	AL4	I	17	19	Right-handed 310
Helix 104	AL5	I	33	47	Right-handed alpha
Helix 105	AL6	I	53	58	Right-handed alpha
Helix 106	AL7	I	80	94	Right-handed alpha
Helix 107	AL8	I	95	108	Right-handed alpha
Helix 108	AL9	I	109	113	Right-handed 310
Helix 109	AM1	I	114	120	Right-handed 310
Helix 110	AM2	I	134	151	Right-handed alpha
Helix 111	AM3	I	157	169	Right-handed alpha
Helix 112	AM4	I	216	224	Right-handed alpha
Helix 113	AM5	I	247	266	Right-handed alpha
Helix 114	AM6	I	280	286	Right-handed alpha
Helix 115	AM7	I	310	326	Right-handed alpha
Helix 116	AM8	I	328	343	Right-handed alpha
Helix 117	AM9	I	373	378	Right-handed 310
Helix 118	AN1	I	398	409	Right-handed alpha
Helix 119	AN2	I	432	450	Right-handed alpha
Helix 120	AN3	I	496	514	Right-handed alpha
Helix 121	AN4	I	518	537	Right-handed alpha
Helix 122	AN5	I	543	552	Right-handed alpha
Helix 123	AN6	I	575	583	Right-handed alpha
Helix 124	AN7	I	587	595	Right-handed alpha
Helix 125	AN8	I	648	662	Right-handed alpha
Helix 126	AN9	I	684	693	Right-handed alpha
Helix 127	AO1	J	12	27	Right-handed alpha
Helix 128	AO2	J	34	36	Right-handed 310
Helix 129	AO3	J	37	42	Right-handed alpha
Helix 130	AO4	J	52	55	Right-handed 310
Helix 131	AO5	J	56	63	Right-handed alpha
Helix 132	AO6	J	102	111	Right-handed alpha
Helix 133	AO7	J	115	124	Right-handed alpha
Helix 134	AO8	J	127	135	Right-handed alpha
Helix 135	AO9	J	166	176	Right-handed alpha
Helix 136	AP1	J	181	187	Right-handed alpha
Helix 137	AP2	J	192	201	Right-handed alpha
Helix 138	AP3	J	205	209	Right-handed 310
Helix 139	AP4	J	211	221	Right-handed alpha
Helix 140	AP5	J	234	239	Right-handed alpha
Helix 141	AP6	J	240	245	Right-handed alpha

There are 37 sheets in PDB entry 8Z9R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	87	89	anti-parallel
Strand 3	A	94	101	anti-parallel
Strand 4	A	115	120	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	585	587	anti-parallel
Strand 3	B	460	462	anti-parallel
Strand 4	B	297	303	anti-parallel
Strand 5	B	423	427	anti-parallel
Strand 6	B	416	419	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	585	587	anti-parallel
Strand 3	B	460	462	anti-parallel
Strand 4	B	297	303	anti-parallel
Strand 5	B	453	454	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	423	431	anti-parallel
Strand 3	A	442	451	anti-parallel
Strand 4	A	409	417	first strand
Strand 5	A	290	291	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	262	first strand
Strand 2	A	465	469	anti-parallel
Strand 3	A	472	476	anti-parallel
Strand 4	A	442	451	anti-parallel
Strand 5	A	423	431	anti-parallel
Strand 6	A	479	484	first strand

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	323	first strand
Strand 2	B	353	356	anti-parallel
Strand 3	B	362	364	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	406	first strand
Strand 2	A	434	435	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	530	first strand
Strand 2	A	535	539	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	126	first strand
Strand 2	B	131	133	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	178	first strand
Strand 2	B	210	215	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	245	first strand
Strand 2	B	225	230	anti-parallel
Strand 3	B	346	348	parallel
Strand 4	B	384	386	anti-parallel
Strand 5	B	380	381	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	470	first strand
Strand 2	B	473	475	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	608	611	first strand
Strand 2	B	619	622	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	633	634	first strand
Strand 2	C	67	68	anti-parallel
Strand 3	C	98	99	anti-parallel
Strand 4	C	85	86	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	C	82	83	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	143	first strand
Strand 2	C	249	251	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	154	first strand
Strand 2	C	224	229	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	298	first strand
Strand 2	C	293	294	anti-parallel
Strand 3	C	534	535	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	330	first strand
Strand 2	C	333	340	anti-parallel
Strand 3	C	369	376	anti-parallel
Strand 4	C	379	386	anti-parallel
Strand 5	C	389	396	anti-parallel
Strand 6	C	481	483	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	351	first strand
Strand 2	C	359	365	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	457	first strand
Strand 2	C	477	478	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	500	first strand
Strand 2	C	506	510	anti-parallel
Strand 3	C	513	518	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	645	647	first strand
Strand 2	C	654	656	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	664	666	first strand
Strand 2	C	670	673	anti-parallel
Strand 3	C	676	680	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	694	695	first strand
Strand 2	C	726	729	anti-parallel
Strand 3	C	718	721	anti-parallel
Strand 4	C	702	703	parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	210	211	first strand
Strand 2	H	585	587	anti-parallel
Strand 3	I	460	462	anti-parallel
Strand 4	I	294	301	anti-parallel
Strand 5	I	423	430	anti-parallel
Strand 6	I	415	420	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	240	242	first strand
Strand 2	H	423	431	anti-parallel
Strand 3	H	444	451	anti-parallel
Strand 4	H	472	482	anti-parallel
Strand 5	H	463	469	anti-parallel
Strand 6	H	260	264	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	240	242	first strand
Strand 2	H	423	431	anti-parallel
Strand 3	H	409	417	anti-parallel
Strand 4	H	290	291	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	322	323	first strand
Strand 2	I	353	356	anti-parallel
Strand 3	I	362	364	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	526	531	first strand
Strand 2	H	534	539	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	124	125	first strand
Strand 2	I	132	133	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	173	175	first strand
Strand 2	I	213	215	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	242	245	first strand
Strand 2	I	225	230	anti-parallel
Strand 3	I	346	347	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	380	381	first strand
Strand 2	I	384	385	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	467	470	first strand
Strand 2	I	473	476	anti-parallel
Strand 3	I	479	482	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	141	143	first strand
Strand 2	J	249	251	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	149	154	first strand
Strand 2	J	224	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Z9R

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z9R