Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z9S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Z9S entry

There is 1 chain in PDB entry 8Z9S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 16SER 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8Z9S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 21Right-handed 310
Helix 2
AA2
A
23 27Right-handed 310
Helix 3
AA3
A
37 42Right-handed alpha
Helix 4
AA4
A
65 74Right-handed alpha
Helix 5
AA5
A
87 91Right-handed 310
Helix 6
AA6
A
92 94Right-handed 310
Helix 7
AA7
A
95 102Right-handed alpha
Helix 8
AA8
A
109 113Right-handed 310
Helix 9
AA9
A
117 121Right-handed 310
Helix 10
AB1
A
124 135Right-handed alpha
Helix 11
AB2
A
138 164Right-handed alpha
Helix 12
AB3
A
169 173Right-handed alpha
Helix 13
AB4
A
175 187Right-handed alpha
Helix 14
AB5
A
189 191Right-handed 310
Helix 15
AB6
A
192 203Right-handed alpha
Helix 16
AB7
A
209 234Right-handed alpha
Helix 17
AB8
A
238 246Right-handed alpha
Helix 18
AB9
A
252 268Right-handed alpha
Helix 19
AC1
A
268 285Right-handed alpha
Helix 20
AC2
A
285 295Right-handed alpha
Helix 21
AC3
A
298 311Right-handed alpha
Helix 22
AC4
A
341 346Right-handed alpha
Helix 23
AC5
A
372 376Right-handed 310
Helix 24
AC6
A
379 398Right-handed alpha
Helix 25
AC7
A
406 410Right-handed 310
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There are 4 sheets in PDB entry 8Z9S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
59 63anti-parallel
Strand 3
A
337 340parallel
Strand 4
A
318 321anti-parallel
Strand 5
A
78 79anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
425 427anti-parallel
Strand 3
A
402 403anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 327first strand
Strand 2
A
330 332anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 413first strand
Strand 2
A
420 421anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il