Analysis of interatomic Contacts of Structural Units in PDB entry:
8Z9U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Z9U entry

There are 2 chains in PDB entry 8Z9U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ARG 3ILE 289
A
 MET 1TYR 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8Z9U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
49 68Right-handed alpha
Helix 2
AA2
B
79 94Right-handed alpha
Helix 3
AA3
B
104 119Right-handed alpha
Helix 4
AA4
B
120 122Right-handed 310
Helix 5
AA5
B
134 143Right-handed alpha
Helix 6
AA6
B
160 179Right-handed alpha
Helix 7
AA7
B
191 193Right-handed 310
Helix 8
AA8
B
194 209Right-handed alpha
Helix 9
AA9
B
217 223Right-handed alpha
Helix 10
AB1
B
226 231Right-handed alpha
Helix 11
AB2
B
235 250Right-handed alpha
Helix 12
AB3
B
262 279Right-handed alpha
Helix 13
AB4
B
283 289Right-handed alpha
Helix 14
AB5
A
49 68Right-handed alpha
Helix 15
AB6
A
79 94Right-handed alpha
Helix 16
AB7
A
104 119Right-handed alpha
Helix 17
AB8
A
120 122Right-handed 310
Helix 18
AB9
A
134 143Right-handed alpha
Helix 19
AC1
A
160 179Right-handed alpha
Helix 20
AC2
A
193 209Right-handed alpha
Helix 21
AC3
A
217 223Right-handed alpha
Helix 22
AC4
A
226 232Right-handed alpha
Helix 23
AC5
A
235 250Right-handed alpha
Helix 24
AC6
A
262 279Right-handed alpha
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There are 6 sheets in PDB entry 8Z9U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
15 17anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 32first strand
Strand 2
B
71 76parallel
Strand 3
B
98 101parallel
Strand 4
B
124 129parallel
Strand 5
B
148 152parallel
Strand 6
B
182 186parallel
Strand 7
B
213 215parallel
Strand 8
B
254 259parallel
Strand 9
B
27 32parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 42first strand
Strand 2
B
47 48anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
15 17anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 32first strand
Strand 2
A
71 76parallel
Strand 3
A
98 101parallel
Strand 4
A
124 129parallel
Strand 5
A
148 152parallel
Strand 6
A
182 186parallel
Strand 7
A
213 215parallel
Strand 8
A
254 259parallel
Strand 9
A
27 32parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
47 48anti-parallel
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