Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZA6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZA6 entry

There are 8 chains in PDB entry 8ZA6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
a
 LEU 26LYS 54
b
 ASP 28LYS 54
d
 PHE 22GLY 127
e
 GLN 33ARG 155
f
 GLN 33LYS 156
g
 LYS 26GLY 138
m
 HIS 255LEU 290
n
 LYS 278ALA 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8ZA6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
a
32 54Right-handed alpha
Helix 2
AA2
b
29 53Right-handed alpha
Helix 3
AA3
d
62 66Right-handed 310
Helix 4
AA4
d
100 127Right-handed alpha
Helix 5
AA5
e
104 108Right-handed 310
Helix 6
AA6
e
126 152Right-handed alpha
Helix 7
AA7
e
153 155Right-handed 310
Helix 8
AA8
f
126 156Right-handed alpha
Helix 9
AA9
g
78 80Right-handed 310
Helix 10
AB1
g
113 138Right-handed alpha
Helix 11
AB2
m
258 289Right-handed alpha
Helix 12
AB3
n
283 320Right-handed alpha
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There are 10 sheets in PDB entry 8ZA6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
27 28first strand
Strand 2
d
33 35anti-parallel
Strand 3
d
58 59anti-parallel
Strand 4
d
50 51anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
43 46first strand
Strand 2
d
68 73anti-parallel
Strand 3
d
84 91anti-parallel
Strand 4
e
111 116parallel
Strand 5
e
95 100anti-parallel
Strand 6
e
57 61anti-parallel
Strand 7
e
65 66anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
96 98first strand
Strand 2
e
122 124anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
e
37 41first strand
Strand 2
e
44 48anti-parallel
Strand 3
e
82 85anti-parallel
Strand 4
e
75 77anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
f
37 41first strand
Strand 2
f
44 48anti-parallel
Strand 3
f
81 84anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
f
58 59first strand
Strand 2
f
98 99anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
f
94 96first strand
Strand 2
f
111 116anti-parallel
Strand 3
g
97 102parallel
Strand 4
g
82 85anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
f
122 124first strand
Strand 2
g
107 109anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
g
31 34first strand
Strand 2
g
41 46anti-parallel
Strand 3
g
71 76anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
g
54 56first strand
Strand 2
g
61 64anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il