Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZAA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZAA entry

There are 4 chains in PDB entry 8ZAA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLU 258	ALA 484
D	TRP 266	ALA 484
G	TRP 240	ARG 492
E	TRP 240	VAL 493

There are 11 helices in PDB entry 8ZAA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	259	290	Right-handed alpha
Helix 2	AA2	C	298	304	Right-handed alpha
Helix 3	AA3	C	316	320	Right-handed 310
Helix 4	AA4	C	396	399	Right-handed 310
Helix 5	AA5	D	267	292	Right-handed alpha
Helix 6	AA6	D	299	304	Right-handed alpha
Helix 7	AA7	G	241	252	Right-handed alpha
Helix 8	AA8	G	254	293	Right-handed alpha
Helix 9	AA9	G	429	431	Right-handed 310
Helix 10	AB1	E	241	292	Right-handed alpha
Helix 11	AB2	E	305	309	Right-handed 310

There are 10 sheets in PDB entry 8ZAA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	326	first strand
Strand 2	C	332	335	anti-parallel
Strand 3	C	479	482	anti-parallel
Strand 4	C	365	371	anti-parallel
Strand 5	C	430	436	anti-parallel
Strand 6	C	441	446	anti-parallel
Strand 7	C	452	456	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	356	first strand
Strand 2	C	466	470	anti-parallel
Strand 3	C	378	383	anti-parallel
Strand 4	C	401	407	anti-parallel
Strand 5	C	411	414	anti-parallel
Strand 6	C	420	421	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	309	310	first strand
Strand 2	D	365	371	parallel
Strand 3	D	430	436	anti-parallel
Strand 4	D	441	446	anti-parallel
Strand 5	D	452	456	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	309	310	first strand
Strand 2	D	365	371	parallel
Strand 3	D	480	481	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	324	326	first strand
Strand 2	D	333	335	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	356	first strand
Strand 2	D	465	470	anti-parallel
Strand 3	D	378	384	anti-parallel
Strand 4	D	402	407	anti-parallel
Strand 5	D	411	414	anti-parallel
Strand 6	D	420	421	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	313	315	first strand
Strand 2	G	321	324	anti-parallel
Strand 3	G	469	471	anti-parallel
Strand 4	G	357	363	anti-parallel
Strand 5	G	297	299	parallel
Strand 6	E	297	299	anti-parallel
Strand 7	E	357	363	parallel
Strand 8	E	421	427	anti-parallel
Strand 9	E	432	437	anti-parallel
Strand 10	E	443	447	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	313	315	first strand
Strand 2	E	321	324	anti-parallel
Strand 3	E	469	471	anti-parallel
Strand 4	E	357	363	anti-parallel
Strand 5	E	297	299	parallel
Strand 6	G	297	299	anti-parallel
Strand 7	G	357	363	parallel
Strand 8	G	421	427	anti-parallel
Strand 9	G	432	437	anti-parallel
Strand 10	G	442	446	anti-parallel
Strand 11	E	488	489	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	346	348	first strand
Strand 2	G	456	462	anti-parallel
Strand 3	G	370	376	anti-parallel
Strand 4	G	393	399	anti-parallel
Strand 5	G	402	404	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	346	348	first strand
Strand 2	E	456	462	anti-parallel
Strand 3	E	370	376	anti-parallel
Strand 4	E	393	399	anti-parallel
Strand 5	E	402	404	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZAA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZAA