Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZAY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZAY entry

There are 4 chains in PDB entry 8ZAY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 3	CYS 226
I	GLU 3	CYS 226
L	ASP 1	CYS 214
M	ASP 1	CYS 214

There are 18 helices in PDB entry 8ZAY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	30	34	Right-handed 310
Helix 2	AA2	H	55	59	Right-handed 310
Helix 3	AA3	H	66	69	Right-handed 310
Helix 4	AA4	H	91	95	Right-handed 310
Helix 5	AA5	H	167	169	Right-handed 310
Helix 6	AA6	H	211	214	Right-handed 310
Helix 7	AA7	I	30	34	Right-handed 310
Helix 8	AA8	I	66	70	Right-handed 310
Helix 9	AA9	I	91	95	Right-handed 310
Helix 10	AB1	I	211	214	Right-handed 310
Helix 11	AB2	L	79	83	Right-handed 310
Helix 12	AB3	L	121	128	Right-handed alpha
Helix 13	AB4	L	183	187	Right-handed alpha
Helix 14	AB5	L	212	214	Right-handed 310
Helix 15	AB6	M	79	83	Right-handed 310
Helix 16	AB7	M	121	128	Right-handed alpha
Helix 17	AB8	M	183	188	Right-handed alpha
Helix 18	AB9	M	212	214	Right-handed 310

There are 22 sheets in PDB entry 8ZAY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	9	first strand
Strand 2	H	20	27	anti-parallel
Strand 3	H	82	87	anti-parallel
Strand 4	H	72	76	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	14	first strand
Strand 2	H	118	122	parallel
Strand 3	H	96	104	anti-parallel
Strand 4	H	35	41	anti-parallel
Strand 5	H	48	53	anti-parallel
Strand 6	H	62	64	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	14	first strand
Strand 2	H	118	122	parallel
Strand 3	H	96	104	anti-parallel
Strand 4	H	110	114	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	135	first strand
Strand 2	H	146	156	anti-parallel
Strand 3	H	185	195	anti-parallel
Strand 4	H	174	176	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	135	first strand
Strand 2	H	146	156	anti-parallel
Strand 3	H	185	195	anti-parallel
Strand 4	H	180	182	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	162	165	first strand
Strand 2	H	205	210	anti-parallel
Strand 3	H	215	220	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	9	first strand
Strand 2	I	20	27	anti-parallel
Strand 3	I	82	87	anti-parallel
Strand 4	I	72	76	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	14	first strand
Strand 2	I	118	122	parallel
Strand 3	I	97	104	anti-parallel
Strand 4	I	36	41	anti-parallel
Strand 5	I	48	53	anti-parallel
Strand 6	I	62	64	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	14	first strand
Strand 2	I	118	122	parallel
Strand 3	I	97	104	anti-parallel
Strand 4	I	110	114	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	131	135	first strand
Strand 2	I	146	156	anti-parallel
Strand 3	I	185	195	anti-parallel
Strand 4	I	174	176	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	131	135	first strand
Strand 2	I	146	156	anti-parallel
Strand 3	I	185	195	anti-parallel
Strand 4	I	180	182	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	162	165	first strand
Strand 2	I	205	210	anti-parallel
Strand 3	I	215	220	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	155	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	205	210	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	5	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	70	75	anti-parallel
Strand 4	M	62	66	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	102	106	parallel
Strand 3	M	85	90	anti-parallel
Strand 4	M	33	38	anti-parallel
Strand 5	M	45	49	anti-parallel
Strand 6	M	53	54	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	102	106	parallel
Strand 3	M	85	90	anti-parallel
Strand 4	M	97	98	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	114	118	first strand
Strand 2	M	129	139	anti-parallel
Strand 3	M	173	182	anti-parallel
Strand 4	M	159	163	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	153	155	first strand
Strand 2	M	145	150	anti-parallel
Strand 3	M	191	197	anti-parallel
Strand 4	M	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZAY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZAY