Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZB2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZB2 entry

There are 2 chains in PDB entry 8ZB2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	PRO 507
B	THR 2	PRO 507

There are 43 helices in PDB entry 8ZB2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	22	Right-handed alpha
Helix 2	AA2	A	65	74	Right-handed alpha
Helix 3	AA3	A	110	119	Right-handed alpha
Helix 4	AA4	A	124	130	Right-handed alpha
Helix 5	AA5	A	132	143	Right-handed alpha
Helix 6	AA6	A	151	153	Right-handed 310
Helix 7	AA7	A	154	160	Right-handed alpha
Helix 8	AA8	A	188	200	Right-handed alpha
Helix 9	AA9	A	215	224	Right-handed alpha
Helix 10	AB1	A	275	282	Right-handed alpha
Helix 11	AB2	A	283	286	Right-handed 310
Helix 12	AB3	A	287	292	Right-handed alpha
Helix 13	AB4	A	293	295	Right-handed 310
Helix 14	AB5	A	357	362	Right-handed alpha
Helix 15	AB6	A	363	365	Right-handed 310
Helix 16	AB7	A	380	401	Right-handed alpha
Helix 17	AB8	A	408	418	Right-handed alpha
Helix 18	AB9	A	420	430	Right-handed alpha
Helix 19	AC1	A	456	466	Right-handed alpha
Helix 20	AC2	A	480	484	Right-handed 310
Helix 21	AC3	A	489	502	Right-handed alpha
Helix 22	AC4	B	12	22	Right-handed alpha
Helix 23	AC5	B	65	74	Right-handed alpha
Helix 24	AC6	B	108	119	Right-handed alpha
Helix 25	AC7	B	124	130	Right-handed alpha
Helix 26	AC8	B	132	143	Right-handed alpha
Helix 27	AC9	B	151	153	Right-handed 310
Helix 28	AD1	B	154	160	Right-handed alpha
Helix 29	AD2	B	188	200	Right-handed alpha
Helix 30	AD3	B	215	224	Right-handed alpha
Helix 31	AD4	B	275	282	Right-handed alpha
Helix 32	AD5	B	283	286	Right-handed 310
Helix 33	AD6	B	287	292	Right-handed alpha
Helix 34	AD7	B	293	295	Right-handed 310
Helix 35	AD8	B	338	342	Right-handed 310
Helix 36	AD9	B	356	362	Right-handed alpha
Helix 37	AE1	B	363	365	Right-handed 310
Helix 38	AE2	B	380	401	Right-handed alpha
Helix 39	AE3	B	408	418	Right-handed alpha
Helix 40	AE4	B	419	430	Right-handed alpha
Helix 41	AE5	B	456	466	Right-handed alpha
Helix 42	AE6	B	480	484	Right-handed 310
Helix 43	AE7	B	489	502	Right-handed alpha

There are 12 sheets in PDB entry 8ZB2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	234	first strand
Strand 2	A	29	32	parallel
Strand 3	A	6	9	parallel
Strand 4	A	270	273	parallel
Strand 5	A	476	479	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	51	53	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	145	first strand
Strand 2	A	148	149	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	244	first strand
Strand 2	A	252	257	anti-parallel
Strand 3	A	262	267	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	300	first strand
Strand 2	A	448	451	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	336	first strand
Strand 2	A	347	353	anti-parallel
Strand 3	A	303	309	anti-parallel
Strand 4	A	431	438	anti-parallel
Strand 5	A	375	376	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	29	32	parallel
Strand 3	B	6	9	parallel
Strand 4	B	270	273	parallel
Strand 5	B	476	479	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	51	53	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	145	first strand
Strand 2	B	148	149	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	244	first strand
Strand 2	B	252	257	anti-parallel
Strand 3	B	262	267	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	300	first strand
Strand 2	B	448	451	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	336	first strand
Strand 2	B	347	353	anti-parallel
Strand 3	B	303	309	anti-parallel
Strand 4	B	431	438	anti-parallel
Strand 5	B	375	376	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZB2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZB2