Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZB3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZB3 entry

There are 6 chains in PDB entry 8ZB3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	ALA 301
B	PHE 3	ALA 301
C	PHE 3	ALA 301
D	PHE 3	ALA 301
E	PHE 3	ALA 301
F	PHE 3	ALA 301

There are 58 helices in PDB entry 8ZB3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	24	Right-handed alpha
Helix 2	AA2	A	25	33	Right-handed alpha
Helix 3	AA3	A	60	63	Right-handed 310
Helix 4	AA4	A	98	103	Right-handed alpha
Helix 5	AA5	A	104	106	Right-handed 310
Helix 6	AA6	A	107	126	Right-handed alpha
Helix 7	AA7	A	141	144	Right-handed 310
Helix 8	AA8	A	199	213	Right-handed alpha
Helix 9	AA9	A	262	271	Right-handed alpha
Helix 10	AB1	A	289	300	Right-handed alpha
Helix 11	AB2	B	9	13	Right-handed 310
Helix 12	AB3	B	19	23	Right-handed 310
Helix 13	AB4	B	25	33	Right-handed alpha
Helix 14	AB5	B	60	63	Right-handed 310
Helix 15	AB6	B	107	126	Right-handed alpha
Helix 16	AB7	B	141	144	Right-handed 310
Helix 17	AB8	B	199	213	Right-handed alpha
Helix 18	AB9	B	262	271	Right-handed alpha
Helix 19	AC1	B	289	300	Right-handed alpha
Helix 20	AC2	C	19	23	Right-handed 310
Helix 21	AC3	C	25	33	Right-handed alpha
Helix 22	AC4	C	60	63	Right-handed 310
Helix 23	AC5	C	98	103	Right-handed alpha
Helix 24	AC6	C	104	106	Right-handed 310
Helix 25	AC7	C	107	126	Right-handed alpha
Helix 26	AC8	C	141	144	Right-handed 310
Helix 27	AC9	C	199	213	Right-handed alpha
Helix 28	AD1	C	262	271	Right-handed alpha
Helix 29	AD2	C	289	300	Right-handed alpha
Helix 30	AD3	D	9	13	Right-handed 310
Helix 31	AD4	D	19	23	Right-handed 310
Helix 32	AD5	D	25	33	Right-handed alpha
Helix 33	AD6	D	60	63	Right-handed 310
Helix 34	AD7	D	107	126	Right-handed alpha
Helix 35	AD8	D	141	144	Right-handed 310
Helix 36	AD9	D	199	213	Right-handed alpha
Helix 37	AE1	D	262	271	Right-handed alpha
Helix 38	AE2	D	289	300	Right-handed alpha
Helix 39	AE3	E	19	23	Right-handed 310
Helix 40	AE4	E	25	33	Right-handed alpha
Helix 41	AE5	E	60	63	Right-handed 310
Helix 42	AE6	E	98	103	Right-handed alpha
Helix 43	AE7	E	104	106	Right-handed 310
Helix 44	AE8	E	107	126	Right-handed alpha
Helix 45	AE9	E	141	144	Right-handed 310
Helix 46	AF1	E	199	213	Right-handed alpha
Helix 47	AF2	E	262	270	Right-handed alpha
Helix 48	AF3	E	289	300	Right-handed alpha
Helix 49	AF4	F	19	23	Right-handed 310
Helix 50	AF5	F	25	33	Right-handed alpha
Helix 51	AF6	F	60	63	Right-handed 310
Helix 52	AF7	F	98	103	Right-handed alpha
Helix 53	AF8	F	104	106	Right-handed 310
Helix 54	AF9	F	107	126	Right-handed alpha
Helix 55	AG1	F	141	144	Right-handed 310
Helix 56	AG2	F	199	213	Right-handed alpha
Helix 57	AG3	F	262	271	Right-handed alpha
Helix 58	AG4	F	289	300	Right-handed alpha

There are 29 sheets in PDB entry 8ZB3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	58	first strand
Strand 2	A	37	41	anti-parallel
Strand 3	A	80	86	parallel
Strand 4	A	71	76	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	53	54	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	140	first strand
Strand 2	A	145	148	anti-parallel
Strand 3	A	154	155	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	193	first strand
Strand 2	A	160	168	anti-parallel
Strand 3	A	232	240	parallel
Strand 4	A	217	227	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	179	first strand
Strand 2	A	254	261	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	B	37	41	anti-parallel
Strand 3	B	80	86	parallel
Strand 4	B	71	76	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	140	first strand
Strand 2	B	145	148	anti-parallel
Strand 3	B	154	155	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	193	first strand
Strand 2	B	160	168	anti-parallel
Strand 3	B	232	240	parallel
Strand 4	B	217	227	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	179	first strand
Strand 2	B	254	261	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	58	first strand
Strand 2	C	37	41	anti-parallel
Strand 3	C	81	86	parallel
Strand 4	C	71	75	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	47	50	anti-parallel
Strand 3	C	96	97	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	140	first strand
Strand 2	C	145	148	anti-parallel
Strand 3	C	154	155	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	193	first strand
Strand 2	C	160	168	anti-parallel
Strand 3	C	232	240	parallel
Strand 4	C	217	227	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	178	first strand
Strand 2	C	256	261	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	58	first strand
Strand 2	D	37	41	anti-parallel
Strand 3	D	81	86	parallel
Strand 4	D	71	75	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	50	first strand
Strand 2	D	53	54	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	140	first strand
Strand 2	D	145	148	anti-parallel
Strand 3	D	154	155	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	190	193	first strand
Strand 2	D	160	168	anti-parallel
Strand 3	D	232	240	parallel
Strand 4	D	217	227	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	179	first strand
Strand 2	D	254	261	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	58	first strand
Strand 2	E	37	41	anti-parallel
Strand 3	E	80	86	parallel
Strand 4	E	71	76	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	50	first strand
Strand 2	E	53	54	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	140	first strand
Strand 2	E	145	148	anti-parallel
Strand 3	E	154	155	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	190	193	first strand
Strand 2	E	160	168	anti-parallel
Strand 3	E	232	240	parallel
Strand 4	E	217	227	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	173	179	first strand
Strand 2	E	254	261	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	58	first strand
Strand 2	F	37	41	anti-parallel
Strand 3	F	80	86	parallel
Strand 4	F	71	76	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	50	first strand
Strand 2	F	53	54	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	140	first strand
Strand 2	F	145	148	anti-parallel
Strand 3	F	154	155	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	190	193	first strand
Strand 2	F	160	168	anti-parallel
Strand 3	F	232	240	parallel
Strand 4	F	217	227	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	173	179	first strand
Strand 2	F	254	261	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZB3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZB3