Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZB5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZB5 entry

There are 2 chains in PDB entry 8ZB5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PHE 3	ALA 301
A	THR 2	ALA 301

There are 17 helices in PDB entry 8ZB5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	19	24	Right-handed alpha
Helix 2	AA2	B	25	33	Right-handed alpha
Helix 3	AA3	B	98	103	Right-handed alpha
Helix 4	AA4	B	104	106	Right-handed 310
Helix 5	AA5	B	107	126	Right-handed alpha
Helix 6	AA6	B	199	213	Right-handed alpha
Helix 7	AA7	B	262	272	Right-handed alpha
Helix 8	AA8	B	289	300	Right-handed alpha
Helix 9	AA9	A	19	24	Right-handed 310
Helix 10	AB1	A	25	33	Right-handed alpha
Helix 11	AB2	A	60	63	Right-handed 310
Helix 12	AB3	A	98	103	Right-handed alpha
Helix 13	AB4	A	104	106	Right-handed 310
Helix 14	AB5	A	107	126	Right-handed alpha
Helix 15	AB6	A	199	213	Right-handed alpha
Helix 16	AB7	A	262	272	Right-handed alpha
Helix 17	AB8	A	289	300	Right-handed alpha

There are 10 sheets in PDB entry 8ZB5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	B	37	41	anti-parallel
Strand 3	B	80	86	parallel
Strand 4	B	71	76	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	47	50	anti-parallel
Strand 3	B	95	96	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	140	first strand
Strand 2	B	145	148	anti-parallel
Strand 3	B	154	155	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	193	first strand
Strand 2	B	160	168	anti-parallel
Strand 3	B	232	240	parallel
Strand 4	B	217	227	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	179	first strand
Strand 2	B	254	261	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	58	first strand
Strand 2	A	37	41	anti-parallel
Strand 3	A	80	86	parallel
Strand 4	A	71	76	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	53	54	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	140	first strand
Strand 2	A	145	148	anti-parallel
Strand 3	A	154	155	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	193	first strand
Strand 2	A	160	168	anti-parallel
Strand 3	A	232	240	parallel
Strand 4	A	217	227	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	179	first strand
Strand 2	A	254	261	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZB5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZB5