Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZB9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZB9 entry

There are 2 chains in PDB entry 8ZB9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1PRO 337
a
 ASP 1ARG 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8ZB9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 27Right-handed 310
Helix 2
AA2
A
40 52Right-handed alpha
Helix 3
AA3
A
61 82Right-handed alpha
Helix 4
AA4
A
144 146Right-handed 310
Helix 5
AA5
A
180 184Right-handed 310
Helix 6
AA6
a
24 27Right-handed 310
Helix 7
AA7
a
40 53Right-handed alpha
Helix 8
AA8
a
61 82Right-handed alpha
Helix 9
AA9
a
144 146Right-handed 310
Helix 10
AB1
a
180 184Right-handed 310
Helix 11
AB2
a
227 231Right-handed 310
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There are 10 sheets in PDB entry 8ZB9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
4 7anti-parallel
Strand 3
a
2 3anti-parallel
Strand 4
a
16 22anti-parallel
Strand 5
A
18 22anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
148 149parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
131 134parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 155first strand
Strand 2
A
169 171anti-parallel
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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 323first strand
Strand 2
A
273 277anti-parallel
Strand 3
A
211 218anti-parallel
Strand 4
A
200 206anti-parallel
Strand 5
A
192 197anti-parallel
Strand 6
A
185 189anti-parallel
Strand 7
a
185 189anti-parallel
Strand 8
a
192 197anti-parallel
Strand 9
a
200 207anti-parallel
Strand 10
a
210 218anti-parallel
Strand 11
a
273 276anti-parallel
Strand 12
a
322 323anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 287first strand
Strand 2
A
311 313parallel
Strand 3
A
335 336anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
34 35first strand
Strand 2
a
167 171parallel
Strand 3
a
153 155anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
56 57first strand
Strand 2
a
148 149parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
86 87first strand
Strand 2
a
131 132parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
285 287first strand
Strand 2
a
311 313parallel
Strand 3
a
335 337anti-parallel
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