Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZBA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZBA entry

There are 4 chains in PDB entry 8ZBA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	PRO 337
B	ASP 1	PRO 337
a	ASP 1	THR 351
b	ASP 1	THR 351

There are 16 helices in PDB entry 8ZBA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	52	Right-handed alpha
Helix 2	AA2	A	63	83	Right-handed alpha
Helix 3	AA3	A	144	146	Right-handed 310
Helix 4	AA4	A	227	231	Right-handed 310
Helix 5	AA5	B	24	27	Right-handed 310
Helix 6	AA6	B	38	52	Right-handed alpha
Helix 7	AA7	B	63	82	Right-handed alpha
Helix 8	AA8	B	144	146	Right-handed 310
Helix 9	AA9	B	227	231	Right-handed 310
Helix 10	AB1	B	244	249	Right-handed alpha
Helix 11	AB2	a	38	52	Right-handed alpha
Helix 12	AB3	a	61	82	Right-handed alpha
Helix 13	AB4	a	227	231	Right-handed 310
Helix 14	AB5	b	38	53	Right-handed alpha
Helix 15	AB6	b	61	76	Right-handed alpha
Helix 16	AB7	b	227	231	Right-handed 310

There are 24 sheets in PDB entry 8ZBA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	4	6	anti-parallel
Strand 3	a	2	4	anti-parallel
Strand 4	a	15	22	anti-parallel
Strand 5	A	18	22	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	166	171	parallel
Strand 3	A	153	159	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	148	149	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	133	134	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	218	first strand
Strand 2	A	200	206	anti-parallel
Strand 3	A	192	197	anti-parallel
Strand 4	A	185	189	anti-parallel
Strand 5	a	185	188	anti-parallel
Strand 6	a	193	196	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	277	first strand
Strand 2	A	321	324	anti-parallel
Strand 3	A	329	330	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	287	first strand
Strand 2	A	311	313	parallel
Strand 3	A	335	336	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	15	first strand
Strand 2	B	4	7	anti-parallel
Strand 3	b	2	4	anti-parallel
Strand 4	b	15	22	anti-parallel
Strand 5	B	18	22	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	35	first strand
Strand 2	B	165	168	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	148	149	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	170	171	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	275	first strand
Strand 2	B	211	218	anti-parallel
Strand 3	B	200	206	anti-parallel
Strand 4	B	192	197	anti-parallel
Strand 5	B	185	189	anti-parallel
Strand 6	b	186	188	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	313	first strand
Strand 2	B	335	336	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	324	first strand
Strand 2	B	329	330	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	56	57	first strand
Strand 2	a	148	149	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	86	87	first strand
Strand 2	a	131	132	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	153	154	first strand
Strand 2	a	170	171	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	201	207	first strand
Strand 2	a	210	218	anti-parallel
Strand 3	a	273	274	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	298	299	first strand
Strand 2	a	329	331	anti-parallel
Strand 3	a	323	324	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	87	90	first strand
Strand 2	b	132	135	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	195	197	first strand
Strand 2	b	200	206	anti-parallel
Strand 3	b	211	217	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	275	276	first strand
Strand 2	b	322	323	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	286	287	first strand
Strand 2	b	311	313	parallel
Strand 3	b	336	337	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	298	299	first strand
Strand 2	b	330	331	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZBA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZBA