Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZBB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZBB entry

There are 4 chains in PDB entry 8ZBB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 12	GLU 593
H	GLU 4	LYS 228
K	GLN 1	SER 120
L	ASP 2	ARG 213

There are 35 helices in PDB entry 8ZBB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	26	Right-handed alpha
Helix 2	AA2	A	27	29	Right-handed 310
Helix 3	AA3	A	32	42	Right-handed alpha
Helix 4	AA4	A	54	61	Right-handed alpha
Helix 5	AA5	A	66	72	Right-handed alpha
Helix 6	AA6	A	79	101	Right-handed alpha
Helix 7	AA7	A	109	136	Right-handed alpha
Helix 8	AA8	A	140	161	Right-handed alpha
Helix 9	AA9	A	161	170	Right-handed alpha
Helix 10	AB1	A	172	194	Right-handed alpha
Helix 11	AB2	A	200	217	Right-handed alpha
Helix 12	AB3	A	222	241	Right-handed alpha
Helix 13	AB4	A	253	279	Right-handed alpha
Helix 14	AB5	A	282	298	Right-handed alpha
Helix 15	AB6	A	309	324	Right-handed alpha
Helix 16	AB7	A	326	336	Right-handed alpha
Helix 17	AB8	A	338	354	Right-handed alpha
Helix 18	AB9	A	359	389	Right-handed alpha
Helix 19	AC1	A	390	406	Right-handed alpha
Helix 20	AC2	A	406	415	Right-handed alpha
Helix 21	AC3	A	418	448	Right-handed alpha
Helix 22	AC4	A	452	470	Right-handed alpha
Helix 23	AC5	A	471	482	Right-handed alpha
Helix 24	AC6	A	483	494	Right-handed alpha
Helix 25	AC7	A	495	505	Right-handed alpha
Helix 26	AC8	A	505	516	Right-handed alpha
Helix 27	AC9	A	526	553	Right-handed alpha
Helix 28	AD1	A	561	593	Right-handed alpha
Helix 29	AD2	H	65	68	Right-handed 310
Helix 30	AD3	H	90	94	Right-handed 310
Helix 31	AD4	H	107	112	Right-handed alpha
Helix 32	AD5	K	62	65	Right-handed 310
Helix 33	AD6	L	123	129	Right-handed 310
Helix 34	AD7	L	151	155	Right-handed 310
Helix 35	AD8	L	186	190	Right-handed 310

There are 11 sheets in PDB entry 8ZBB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	20	28	anti-parallel
Strand 3	H	81	87	anti-parallel
Strand 4	H	71	76	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	63	first strand
Strand 2	H	48	55	anti-parallel
Strand 3	H	36	42	anti-parallel
Strand 4	H	95	102	anti-parallel
Strand 5	H	121	123	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	136	137	first strand
Strand 2	H	150	155	anti-parallel
Strand 3	H	193	198	anti-parallel
Strand 4	H	177	178	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	164	168	first strand
Strand 2	H	210	214	anti-parallel
Strand 3	H	219	223	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	17	25	anti-parallel
Strand 3	K	78	84	anti-parallel
Strand 4	K	69	73	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	115	119	parallel
Strand 3	K	92	98	anti-parallel
Strand 4	K	34	37	anti-parallel
Strand 5	K	47	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	25	first strand
Strand 2	L	71	76	anti-parallel
Strand 3	L	63	68	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	49	first strand
Strand 2	L	34	39	anti-parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	99	100	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	49	first strand
Strand 2	L	34	39	anti-parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	104	105	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	120	first strand
Strand 2	L	131	139	anti-parallel
Strand 3	L	176	184	anti-parallel
Strand 4	L	161	165	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	146	149	first strand
Strand 2	L	196	200	anti-parallel
Strand 3	L	207	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZBB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZBB