Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZBC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZBC entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 8ZBC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2ASP 12
A
 LEU 14HIS 228
B
 GLN 1ASP 12
B
 LEU 14HIS 228
C
 ASP 2ASP 12
C
 LEU 14GLN 219
D
 ASP 2ASP 12
D
 LEU 14HIS 228
E
 ASP 2ASP 12
E
 LEU 14GLN 219
F
 ASP 2ASP 12
F
 LEU 14GLN 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 69 helices in PDB entry 8ZBC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 17Right-handed alpha
Helix 2
AA2
A
31 34Right-handed 310
Helix 3
AA3
A
35 45Right-handed alpha
Helix 4
AA4
A
71 84Right-handed alpha
Helix 5
AA5
A
95 103Right-handed 310
Helix 6
AA6
A
105 122Right-handed alpha
Helix 7
AA7
A
152 157Right-handed 310
Helix 8
AA8
A
158 165Right-handed alpha
Helix 9
AA9
A
165 177Right-handed alpha
Helix 10
AB1
A
185 187Right-handed 310
Helix 11
AB2
A
199 219Right-handed alpha
Helix 12
AB3
A
219 227Right-handed alpha
Helix 13
AB4
B
12 17Right-handed alpha
Helix 14
AB5
B
31 34Right-handed 310
Helix 15
AB6
B
35 45Right-handed alpha
Helix 16
AB7
B
71 84Right-handed alpha
Helix 17
AB8
B
95 103Right-handed 310
Helix 18
AB9
B
105 122Right-handed alpha
Helix 19
AC1
B
152 157Right-handed 310
Helix 20
AC2
B
158 165Right-handed alpha
Helix 21
AC3
B
165 177Right-handed alpha
Helix 22
AC4
B
185 187Right-handed 310
Helix 23
AC5
B
199 219Right-handed alpha
Helix 24
AC6
B
219 228Right-handed alpha
Helix 25
AC7
C
12 17Right-handed alpha
Helix 26
AC8
C
31 34Right-handed 310
Helix 27
AC9
C
35 45Right-handed alpha
Helix 28
AD1
C
71 84Right-handed alpha
Helix 29
AD2
C
95 103Right-handed 310
Helix 30
AD3
C
105 122Right-handed alpha
Helix 31
AD4
C
152 157Right-handed 310
Helix 32
AD5
C
158 165Right-handed alpha
Helix 33
AD6
C
165 177Right-handed alpha
Helix 34
AD7
C
185 187Right-handed 310
Helix 35
AD8
C
199 219Right-handed alpha
Helix 36
AD9
D
12 17Right-handed alpha
Helix 37
AE1
D
31 34Right-handed 310
Helix 38
AE2
D
35 45Right-handed alpha
Helix 39
AE3
D
71 84Right-handed alpha
Helix 40
AE4
D
95 103Right-handed 310
Helix 41
AE5
D
105 122Right-handed alpha
Helix 42
AE6
D
152 157Right-handed 310
Helix 43
AE7
D
158 165Right-handed alpha
Helix 44
AE8
D
165 177Right-handed alpha
Helix 45
AE9
D
185 187Right-handed 310
Helix 46
AF1
D
199 219Right-handed alpha
Helix 47
AF2
D
219 228Right-handed alpha
Helix 48
AF3
E
12 17Right-handed alpha
Helix 49
AF4
E
31 34Right-handed 310
Helix 50
AF5
E
35 45Right-handed alpha
Helix 51
AF6
E
71 84Right-handed alpha
Helix 52
AF7
E
95 103Right-handed 310
Helix 53
AF8
E
105 122Right-handed alpha
Helix 54
AF9
E
152 157Right-handed 310
Helix 55
AG1
E
158 165Right-handed alpha
Helix 56
AG2
E
165 177Right-handed alpha
Helix 57
AG3
E
185 187Right-handed 310
Helix 58
AG4
E
199 219Right-handed alpha
Helix 59
AG5
F
12 17Right-handed alpha
Helix 60
AG6
F
31 34Right-handed 310
Helix 61
AG7
F
35 45Right-handed alpha
Helix 62
AG8
F
71 84Right-handed alpha
Helix 63
AG9
F
95 103Right-handed 310
Helix 64
AH1
F
105 122Right-handed alpha
Helix 65
AH2
F
152 157Right-handed 310
Helix 66
AH3
F
158 165Right-handed alpha
Helix 67
AH4
F
165 177Right-handed alpha
Helix 68
AH5
F
185 187Right-handed 310
Helix 69
AH6
F
199 219Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8ZBC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 54first strand
Strand 2
A
5 11parallel
Strand 3
A
88 92parallel
Strand 4
A
136 140parallel
Strand 5
A
180 183parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 54first strand
Strand 2
B
5 11parallel
Strand 3
B
88 92parallel
Strand 4
B
136 140parallel
Strand 5
B
180 183parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 54first strand
Strand 2
C
5 11parallel
Strand 3
C
88 92parallel
Strand 4
C
136 140parallel
Strand 5
C
180 183parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 54first strand
Strand 2
D
5 11parallel
Strand 3
D
88 92parallel
Strand 4
D
136 140parallel
Strand 5
D
180 183parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
48 54first strand
Strand 2
E
5 11parallel
Strand 3
E
88 92parallel
Strand 4
E
136 140parallel
Strand 5
E
180 183parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
48 54first strand
Strand 2
F
5 11parallel
Strand 3
F
88 92parallel
Strand 4
F
136 140parallel
Strand 5
F
180 183parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il