Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZBD entry

There are 2 chains in PDB entry 8ZBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 235
B
 MET 1ASN 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8ZBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 34Right-handed 310
Helix 2
AA2
A
35 46Right-handed alpha
Helix 3
AA3
A
65 74Right-handed alpha
Helix 4
AA4
A
82 84Right-handed 310
Helix 5
AA5
A
150 162Right-handed alpha
Helix 6
AA6
A
185 192Right-handed alpha
Helix 7
AA7
A
200 211Right-handed alpha
Helix 8
AA8
A
218 228Right-handed alpha
Helix 9
AA9
B
32 34Right-handed 310
Helix 10
AB1
B
35 46Right-handed alpha
Helix 11
AB2
B
65 74Right-handed alpha
Helix 12
AB3
B
82 84Right-handed 310
Helix 13
AB4
B
150 162Right-handed alpha
Helix 14
AB5
B
185 192Right-handed alpha
Helix 15
AB6
B
200 210Right-handed alpha
Helix 16
AB7
B
218 228Right-handed alpha
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There are 6 sheets in PDB entry 8ZBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
13 20anti-parallel
Strand 3
A
25 29anti-parallel
Strand 4
A
49 54parallel
Strand 5
A
76 80parallel
Strand 6
A
90 92parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
103 109anti-parallel
Strand 3
A
118 123anti-parallel
Strand 4
A
128 133anti-parallel
Strand 5
A
170 173parallel
Strand 6
A
183 184anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 137first strand
Strand 2
A
140 141anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 8first strand
Strand 2
B
13 20anti-parallel
Strand 3
B
25 29anti-parallel
Strand 4
B
49 54parallel
Strand 5
B
76 80parallel
Strand 6
B
90 92parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 100first strand
Strand 2
B
103 109anti-parallel
Strand 3
B
118 123anti-parallel
Strand 4
B
128 133anti-parallel
Strand 5
B
170 173parallel
Strand 6
B
183 184anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 137first strand
Strand 2
B
140 141anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il