Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZBE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZBE entry

There are 7 chains in PDB entry 8ZBE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 42LYS 317
B
 SER 6LEU 353
D
 THR 6GLU 63
E
 ALA 1LEU 247
P
 CYS 2PHE 3
P
 LYS 5CYS 7
C
 GLU 3SER 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8ZBE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 68Right-handed alpha
Helix 2
AA2
A
73 90Right-handed alpha
Helix 3
AA3
A
91 102Right-handed alpha
Helix 4
AA4
A
109 114Right-handed alpha
Helix 5
AA5
A
114 119Right-handed alpha
Helix 6
AA6
A
120 142Right-handed alpha
Helix 7
AA7
A
143 147Right-handed 310
Helix 8
AA8
A
152 177Right-handed alpha
Helix 9
AA9
A
196 210Right-handed alpha
Helix 10
AB1
A
219 225Right-handed alpha
Helix 11
AB2
A
240 261Right-handed alpha
Helix 12
AB3
A
261 274Right-handed alpha
Helix 13
AB4
A
279 308Right-handed alpha
Helix 14
AB5
A
308 316Right-handed alpha
Helix 15
AB6
B
7 33Right-handed alpha
Helix 16
AB7
B
46 52Right-handed alpha
Helix 17
AB8
B
201 204Right-handed 310
Helix 18
AB9
B
207 216Right-handed 310
Helix 19
AC1
B
226 230Right-handed 310
Helix 20
AC2
B
243 256Right-handed alpha
Helix 21
AC3
B
270 281Right-handed alpha
Helix 22
AC4
B
295 311Right-handed alpha
Helix 23
AC5
B
332 352Right-handed alpha
Helix 24
AC6
D
7 25Right-handed alpha
Helix 25
AC7
D
29 45Right-handed alpha
Helix 26
AC8
E
28 32Right-handed 310
Helix 27
AC9
E
62 65Right-handed 310
Helix 28
AD1
C
4 26Right-handed alpha
Helix 29
AD2
C
29 34Right-handed alpha
Helix 30
AD3
C
35 37Right-handed 310
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There are 17 sheets in PDB entry 8ZBE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
220 224parallel
Strand 3
B
263 268parallel
Strand 4
B
320 323parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 190first strand
Strand 2
B
195 200anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
18 25anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
68 73anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
45 47first strand
Strand 2
E
36 39anti-parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
107 111anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
45 47first strand
Strand 2
E
36 39anti-parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
115 117anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
49 50first strand
Strand 2
E
59 60anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
155 157first strand
Strand 2
E
211 216anti-parallel
Strand 3
E
206 208anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
176 179first strand
Strand 2
E
226 229anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
189 190first strand
Strand 2
E
194 195anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 51first strand
Strand 2
C
336 340anti-parallel
Strand 3
C
327 328anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 63first strand
Strand 2
C
69 74anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
88 94anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 105first strand
Strand 2
C
111 116anti-parallel
Strand 3
C
122 125anti-parallel
Strand 4
C
134 137anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
148 153first strand
Strand 2
C
156 160anti-parallel
Strand 3
C
165 170anti-parallel
Strand 4
C
175 176anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
148 153first strand
Strand 2
C
156 160anti-parallel
Strand 3
C
165 170anti-parallel
Strand 4
C
180 181anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 192first strand
Strand 2
C
198 203anti-parallel
Strand 3
C
208 212anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 234first strand
Strand 2
C
240 245anti-parallel
Strand 3
C
251 254anti-parallel
Strand 4
C
262 263anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 276first strand
Strand 2
C
284 289anti-parallel
Strand 3
C
296 298anti-parallel
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