Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZBI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZBI entry

There are 6 chains in PDB entry 8ZBI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 5	PHE 354
C	THR 29	ASN 340
E	ARG 27	ARG 62
F	VAL 40	LEU 285
D	ALA 41	ARG 325
S	CYS 3	CYS 14

There are 19 helices in PDB entry 8ZBI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	6	30	Right-handed alpha
Helix 2	AA2	B	207	216	Right-handed alpha
Helix 3	AA3	B	330	351	Right-handed alpha
Helix 4	AA4	C	30	35	Right-handed alpha
Helix 5	AA5	E	29	44	Right-handed alpha
Helix 6	AA6	F	66	70	Right-handed 310
Helix 7	AA7	F	125	129	Right-handed 310
Helix 8	AA8	D	42	72	Right-handed alpha
Helix 9	AA9	D	78	107	Right-handed alpha
Helix 10	AB1	D	113	147	Right-handed alpha
Helix 11	AB2	D	156	175	Right-handed alpha
Helix 12	AB3	D	175	181	Right-handed alpha
Helix 13	AB4	D	198	217	Right-handed alpha
Helix 14	AB5	D	217	239	Right-handed alpha
Helix 15	AB6	D	248	254	Right-handed alpha
Helix 16	AB7	D	256	283	Right-handed alpha
Helix 17	AB8	D	288	290	Right-handed 310
Helix 18	AB9	D	291	314	Right-handed alpha
Helix 19	AC1	D	317	325	Right-handed alpha

There are 16 sheets in PDB entry 8ZBI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	38	first strand
Strand 2	B	195	200	parallel
Strand 3	B	186	190	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	223	first strand
Strand 2	B	264	266	parallel
Strand 3	B	319	321	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	51	first strand
Strand 2	C	336	339	anti-parallel
Strand 3	C	327	330	anti-parallel
Strand 4	C	319	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	63	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	88	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	105	first strand
Strand 2	C	111	116	anti-parallel
Strand 3	C	121	125	anti-parallel
Strand 4	C	134	139	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	151	first strand
Strand 2	C	157	161	anti-parallel
Strand 3	C	166	169	anti-parallel
Strand 4	C	176	179	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	198	202	anti-parallel
Strand 3	C	207	212	anti-parallel
Strand 4	C	218	223	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	234	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	250	254	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	278	first strand
Strand 2	C	284	289	anti-parallel
Strand 3	C	297	298	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	295	first strand
Strand 2	C	307	308	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	45	first strand
Strand 2	F	56	63	anti-parallel
Strand 3	F	116	121	anti-parallel
Strand 4	F	106	111	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	50	first strand
Strand 2	F	153	157	parallel
Strand 3	F	130	137	anti-parallel
Strand 4	F	71	77	anti-parallel
Strand 5	F	83	89	anti-parallel
Strand 6	F	96	98	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	179	first strand
Strand 2	F	193	199	anti-parallel
Strand 3	F	250	254	anti-parallel
Strand 4	F	241	244	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	185	186	first strand
Strand 2	F	281	284	parallel
Strand 3	F	264	269	anti-parallel
Strand 4	F	212	217	anti-parallel
Strand 5	F	224	225	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	227	228	first strand
Strand 2	F	232	233	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	183	first strand
Strand 2	D	192	193	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZBI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZBI