Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZBJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZBJ entry

There are 6 chains in PDB entry 8ZBJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
S	ASN 5	THR 12
C	ASP 5	ASN 340
E	ALA 10	GLU 63
F	ASP 39	LEU 283
R	ALA 40	GLN 316
A	THR 4	LEU 353

There are 23 helices in PDB entry 8ZBJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	6	26	Right-handed alpha
Helix 2	AA2	C	29	35	Right-handed alpha
Helix 3	AA3	E	11	24	Right-handed alpha
Helix 4	AA4	E	29	44	Right-handed alpha
Helix 5	AA5	F	66	70	Right-handed 310
Helix 6	AA6	F	125	129	Right-handed 310
Helix 7	AA7	R	41	67	Right-handed alpha
Helix 8	AA8	R	74	92	Right-handed alpha
Helix 9	AA9	R	93	103	Right-handed alpha
Helix 10	AB1	R	108	143	Right-handed alpha
Helix 11	AB2	R	152	170	Right-handed alpha
Helix 12	AB3	R	171	178	Right-handed alpha
Helix 13	AB4	R	193	207	Right-handed alpha
Helix 14	AB5	R	210	229	Right-handed alpha
Helix 15	AB6	R	241	274	Right-handed alpha
Helix 16	AB7	R	279	306	Right-handed alpha
Helix 17	AB8	R	308	316	Right-handed alpha
Helix 18	AB9	A	6	31	Right-handed alpha
Helix 19	AC1	A	207	216	Right-handed 310
Helix 20	AC2	A	243	255	Right-handed alpha
Helix 21	AC3	A	256	260	Right-handed 310
Helix 22	AC4	A	300	311	Right-handed alpha
Helix 23	AC5	A	330	352	Right-handed alpha

There are 12 sheets in PDB entry 8ZBJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	51	first strand
Strand 2	C	336	339	anti-parallel
Strand 3	C	327	331	anti-parallel
Strand 4	C	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	63	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	88	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	105	first strand
Strand 2	C	111	116	anti-parallel
Strand 3	C	121	125	anti-parallel
Strand 4	C	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	151	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	166	170	anti-parallel
Strand 4	C	176	179	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	198	202	anti-parallel
Strand 3	C	207	212	anti-parallel
Strand 4	C	218	223	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	234	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	250	254	anti-parallel
Strand 4	C	260	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	278	first strand
Strand 2	C	284	289	anti-parallel
Strand 3	C	294	298	anti-parallel
Strand 4	C	307	308	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	46	first strand
Strand 2	F	56	63	anti-parallel
Strand 3	F	116	121	anti-parallel
Strand 4	F	106	111	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	50	first strand
Strand 2	F	153	157	parallel
Strand 3	F	131	137	anti-parallel
Strand 4	F	71	77	anti-parallel
Strand 5	F	83	89	anti-parallel
Strand 6	F	96	98	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	179	first strand
Strand 2	F	195	199	anti-parallel
Strand 3	F	250	253	anti-parallel
Strand 4	F	242	244	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	232	233	first strand
Strand 2	F	224	228	anti-parallel
Strand 3	F	212	217	anti-parallel
Strand 4	F	264	269	anti-parallel
Strand 5	F	281	282	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	190	first strand
Strand 2	A	195	200	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	220	225	parallel
Strand 5	A	263	268	parallel
Strand 6	A	319	323	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZBJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZBJ