Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZBQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZBQ entry

There are 2 chains in PDB entry 8ZBQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	SER 19	ASP 615
F	CYS 336	LEU 518

There are 40 helices in PDB entry 8ZBQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	21	23	Right-handed 310
Helix 2	AA2	D	24	53	Right-handed alpha
Helix 3	AA3	D	55	81	Right-handed alpha
Helix 4	AA4	D	82	83	Right-handed 310
Helix 5	AA5	D	84	88	Right-handed 310
Helix 6	AA6	D	92	101	Right-handed alpha
Helix 7	AA7	D	109	129	Right-handed alpha
Helix 8	AA8	D	147	155	Right-handed alpha
Helix 9	AA9	D	158	163	Right-handed alpha
Helix 10	AB1	D	165	171	Right-handed alpha
Helix 11	AB2	D	172	193	Right-handed alpha
Helix 12	AB3	D	198	205	Right-handed alpha
Helix 13	AB4	D	206	208	Right-handed 310
Helix 14	AB5	D	218	247	Right-handed alpha
Helix 15	AB6	D	265	267	Right-handed 310
Helix 16	AB7	D	275	279	Right-handed 310
Helix 17	AB8	D	292	296	Right-handed 310
Helix 18	AB9	D	305	318	Right-handed alpha
Helix 19	AC1	D	324	329	Right-handed alpha
Helix 20	AC2	D	365	385	Right-handed alpha
Helix 21	AC3	D	386	388	Right-handed 310
Helix 22	AC4	D	389	393	Right-handed 310
Helix 23	AC5	D	400	414	Right-handed alpha
Helix 24	AC6	D	416	421	Right-handed alpha
Helix 25	AC7	D	431	447	Right-handed alpha
Helix 26	AC8	D	449	465	Right-handed alpha
Helix 27	AC9	D	469	471	Right-handed 310
Helix 28	AD1	D	472	484	Right-handed alpha
Helix 29	AD2	D	498	503	Right-handed 310
Helix 30	AD3	D	512	533	Right-handed alpha
Helix 31	AD4	D	538	542	Right-handed 310
Helix 32	AD5	D	550	559	Right-handed alpha
Helix 33	AD6	D	565	574	Right-handed alpha
Helix 34	AD7	D	581	588	Right-handed alpha
Helix 35	AD8	D	588	599	Right-handed alpha
Helix 36	AD9	D	611	615	Right-handed 310
Helix 37	AE1	F	340	344	Right-handed 310
Helix 38	AE2	F	364	371	Right-handed 310
Helix 39	AE3	F	403	407	Right-handed 310
Helix 40	AE4	F	502	506	Right-handed 310

There are 5 sheets in PDB entry 8ZBQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	133	first strand
Strand 2	D	141	142	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	263	first strand
Strand 2	D	487	488	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	350	first strand
Strand 2	D	356	359	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	354	358	first strand
Strand 2	F	394	402	anti-parallel
Strand 3	F	508	516	anti-parallel
Strand 4	F	432	437	anti-parallel
Strand 5	F	376	379	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	452	454	first strand
Strand 2	F	492	494	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZBQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZBQ