Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZBR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZBR entry

There is 1 chain in PDB entry 8ZBR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9PRO 1298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8ZBR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 16Right-handed 310
Helix 2
AA2
A
17 23Right-handed alpha
Helix 3
AA3
A
24 26Right-handed 310
Helix 4
AA4
A
27 37Right-handed alpha
Helix 5
AA5
A
40 44Right-handed 310
Helix 6
AA6
A
48 51Right-handed 310
Helix 7
AA7
A
52 75Right-handed alpha
Helix 8
AA8
A
79 122Right-handed alpha
Helix 9
AA9
A
128 150Right-handed alpha
Helix 10
AB1
A
150 179Right-handed alpha
Helix 11
AB2
A
182 189Right-handed alpha
Helix 12
AB3
A
190 200Right-handed alpha
Helix 13
AB4
A
204 209Right-handed alpha
Helix 14
AB5
A
213 233Right-handed alpha
Helix 15
AB6
A
236 282Right-handed alpha
Helix 16
AB7
A
282 290Right-handed alpha
Helix 17
AB8
A
291 342Right-handed alpha
Helix 18
AB9
A
347 367Right-handed alpha
Helix 19
AC1
A
367 390Right-handed alpha
Helix 20
AC2
A
450 460Right-handed alpha
Helix 21
AC3
A
489 495Right-handed alpha
Helix 22
AC4
A
500 512Right-handed alpha
Helix 23
AC5
A
513 520Right-handed alpha
Helix 24
AC6
A
522 525Right-handed 310
Helix 25
AC7
A
529 533Right-handed 310
Helix 26
AC8
A
536 552Right-handed alpha
Helix 27
AC9
A
566 577Right-handed alpha
Helix 28
AD1
A
580 585Right-handed 310
Helix 29
AD2
A
698 709Right-handed alpha
Helix 30
AD3
A
710 744Right-handed alpha
Helix 31
AD4
A
760 807Right-handed alpha
Helix 32
AD5
A
809 816Right-handed alpha
Helix 33
AD6
A
817 827Right-handed alpha
Helix 34
AD7
A
827 835Right-handed alpha
Helix 35
AD8
A
835 861Right-handed alpha
Helix 36
AD9
A
864 896Right-handed alpha
Helix 37
AE1
A
897 910Right-handed alpha
Helix 38
AE2
A
910 917Right-handed alpha
Helix 39
AE3
A
920 970Right-handed alpha
Helix 40
AE4
A
975 1018Right-handed alpha
Helix 41
AE5
A
1082 1089Right-handed alpha
Helix 42
AE6
A
1106 1108Right-handed 310
Helix 43
AE7
A
1110 1115Right-handed alpha
Helix 44
AE8
A
1130 1136Right-handed alpha
Helix 45
AE9
A
1142 1153Right-handed alpha
Helix 46
AF1
A
1155 1160Right-handed alpha
Helix 47
AF2
A
1178 1194Right-handed alpha
Helix 48
AF3
A
1208 1223Right-handed alpha
Helix 49
AF4
A
1257 1264Right-handed alpha
Helix 50
AF5
A
1267 1277Right-handed alpha
Helix 51
AF6
A
1278 1297Right-handed alpha
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There are 4 sheets in PDB entry 8ZBR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 443first strand
Strand 2
A
586 590parallel
Strand 3
A
555 559parallel
Strand 4
A
475 477parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 488first strand
Strand 2
A
527 528anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1058 1065first strand
Strand 2
A
1041 1048anti-parallel
Strand 3
A
1095 1100anti-parallel
Strand 4
A
1103 1104anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1117 1120first strand
Strand 2
A
1197 1201parallel
Strand 3
A
1227 1231parallel
Strand 4
A
1070 1074parallel
Strand 5
A
1243 1248parallel
Strand 6
A
1251 1256anti-parallel
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