Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZCE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZCE entry

There are 5 chains in PDB entry 8ZCE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 11	LEU 394
B	GLU 3	ASN 340
C	THR 6	PHE 61
N	GLN 1	VAL 126
R	GLU 7	LEU 301

There are 25 helices in PDB entry 8ZCE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	39	Right-handed alpha
Helix 2	AA2	A	54	61	Right-handed alpha
Helix 3	AA3	A	265	279	Right-handed alpha
Helix 4	AA4	A	280	283	Right-handed 310
Helix 5	AA5	A	294	304	Right-handed alpha
Helix 6	AA6	A	312	316	Right-handed 310
Helix 7	AA7	A	331	351	Right-handed alpha
Helix 8	AA8	A	369	391	Right-handed alpha
Helix 9	AA9	B	4	26	Right-handed alpha
Helix 10	AB1	B	29	34	Right-handed 310
Helix 11	AB2	C	11	25	Right-handed alpha
Helix 12	AB3	C	29	44	Right-handed alpha
Helix 13	AB4	R	14	17	Right-handed 310
Helix 14	AB5	R	18	48	Right-handed alpha
Helix 15	AB6	R	51	79	Right-handed alpha
Helix 16	AB7	R	86	98	Right-handed alpha
Helix 17	AB8	R	99	120	Right-handed alpha
Helix 18	AB9	R	130	149	Right-handed alpha
Helix 19	AC1	R	150	155	Right-handed alpha
Helix 20	AC2	R	175	188	Right-handed alpha
Helix 21	AC3	R	190	211	Right-handed alpha
Helix 22	AC4	R	215	254	Right-handed alpha
Helix 23	AC5	R	259	276	Right-handed alpha
Helix 24	AC6	R	277	287	Right-handed alpha
Helix 25	AC7	R	290	301	Right-handed alpha

There are 12 sheets in PDB entry 8ZCE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	214	first strand
Strand 2	A	217	224	anti-parallel
Strand 3	A	40	46	parallel
Strand 4	A	243	246	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	317	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	135	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	304	309	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	5	first strand
Strand 2	N	23	24	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	11	first strand
Strand 2	N	122	125	parallel
Strand 3	N	93	97	anti-parallel
Strand 4	N	35	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	17	19	first strand
Strand 2	N	82	84	anti-parallel
Strand 3	N	68	69	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	159	160	first strand
Strand 2	R	166	167	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZCE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZCE