Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZCS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZCS entry

There are 3 chains in PDB entry 8ZCS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -196HIS 325
B
 GLY -196HIS 320
C
 TYR -3LEU 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8ZCS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-180 -164Right-handed alpha
Helix 2
AA2
A
-154 -143Right-handed alpha
Helix 3
AA3
A
-130 -123Right-handed alpha
Helix 4
AA4
A
-114 -107Right-handed alpha
Helix 5
AA5
A
-106 -99Right-handed alpha
Helix 6
AA6
A
-68 -66Right-handed 310
Helix 7
AA7
A
-65 -55Right-handed alpha
Helix 8
AA8
A
-43 -30Right-handed alpha
Helix 9
AA9
A
-11 5Right-handed alpha
Helix 10
AB1
A
13 23Right-handed alpha
Helix 11
AB2
A
32 34Right-handed 310
Helix 12
AB3
A
35 43Right-handed alpha
Helix 13
AB4
A
76 87Right-handed alpha
Helix 14
AB5
A
90 101Right-handed alpha
Helix 15
AB6
A
108 116Right-handed alpha
Helix 16
AB7
A
118 131Right-handed alpha
Helix 17
AB8
A
139 156Right-handed alpha
Helix 18
AB9
A
160 191Right-handed alpha
Helix 19
AC1
A
203 224Right-handed alpha
Helix 20
AC2
A
224 236Right-handed alpha
Helix 21
AC3
A
240 245Right-handed alpha
Helix 22
AC4
A
249 253Right-handed 310
Helix 23
AC5
A
260 281Right-handed alpha
Helix 24
AC6
A
283 285Right-handed 310
Helix 25
AC7
A
286 309Right-handed alpha
Helix 26
AC8
A
310 325Right-handed alpha
Helix 27
AC9
B
-180 -168Right-handed alpha
Helix 28
AD1
B
-154 -143Right-handed alpha
Helix 29
AD2
B
-130 -123Right-handed alpha
Helix 30
AD3
B
-114 -107Right-handed alpha
Helix 31
AD4
B
-106 -99Right-handed alpha
Helix 32
AD5
B
-68 -66Right-handed 310
Helix 33
AD6
B
-65 -55Right-handed alpha
Helix 34
AD7
B
-43 -32Right-handed alpha
Helix 35
AD8
B
-11 5Right-handed alpha
Helix 36
AD9
B
13 23Right-handed alpha
Helix 37
AE1
B
32 34Right-handed 310
Helix 38
AE2
B
35 43Right-handed alpha
Helix 39
AE3
B
76 87Right-handed alpha
Helix 40
AE4
B
90 101Right-handed alpha
Helix 41
AE5
B
108 116Right-handed alpha
Helix 42
AE6
B
118 131Right-handed alpha
Helix 43
AE7
B
139 156Right-handed alpha
Helix 44
AE8
B
160 191Right-handed alpha
Helix 45
AE9
B
203 224Right-handed alpha
Helix 46
AF1
B
224 235Right-handed alpha
Helix 47
AF2
B
239 255Right-handed alpha
Helix 48
AF3
B
260 281Right-handed alpha
Helix 49
AF4
B
283 285Right-handed 310
Helix 50
AF5
B
286 309Right-handed alpha
Helix 51
AF6
B
310 319Right-handed alpha
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There are 9 sheets in PDB entry 8ZCS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-162 -158first strand
Strand 2
A
-190 -186parallel
Strand 3
A
-137 -133parallel
Strand 4
A
62 70anti-parallel
Strand 5
A
-90 -85anti-parallel
Strand 6
A
105 106anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-162 -158first strand
Strand 2
A
-190 -186parallel
Strand 3
A
-137 -133parallel
Strand 4
A
62 70anti-parallel
Strand 5
A
132 133parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-98 -97first strand
Strand 2
A
-94 -93anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-51 -49first strand
Strand 2
A
26 31parallel
Strand 3
A
-82 -78anti-parallel
Strand 4
A
46 49anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-159 -158first strand
Strand 2
B
-187 -186parallel
Strand 3
B
-137 -133parallel
Strand 4
B
62 70anti-parallel
Strand 5
B
-90 -85anti-parallel
Strand 6
B
105 106anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-159 -158first strand
Strand 2
B
-187 -186parallel
Strand 3
B
-137 -133parallel
Strand 4
B
62 70anti-parallel
Strand 5
B
132 133parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-98 -97first strand
Strand 2
B
-94 -93anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-51 -49first strand
Strand 2
B
26 31parallel
Strand 3
B
-82 -78anti-parallel
Strand 4
B
46 49anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
-2 0first strand
Strand 2
C
5 7anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il