Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZCY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZCY entry

There are 6 chains in PDB entry 8ZCY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 1053
B
 G 14 A 98
C
 A -2 G 12
C
 C 20 G 33
D
 C -21 G -8
D
 C 0 T 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8ZCY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
438 444Right-handed alpha
Helix 2
AA2
A
447 469Right-handed alpha
Helix 3
AA3
A
483 512Right-handed alpha
Helix 4
AA4
A
515 520Right-handed alpha
Helix 5
AA5
A
520 531Right-handed alpha
Helix 6
AA6
A
542 549Right-handed alpha
Helix 7
AA7
A
560 565Right-handed alpha
Helix 8
AA8
A
568 570Right-handed 310
Helix 9
AA9
A
577 584Right-handed alpha
Helix 10
AB1
A
587 593Right-handed alpha
Helix 11
AB2
A
600 613Right-handed alpha
Helix 12
AB3
A
619 627Right-handed alpha
Helix 13
AB4
A
634 646Right-handed alpha
Helix 14
AB5
A
650 668Right-handed alpha
Helix 15
AB6
A
677 688Right-handed alpha
Helix 16
AB7
A
698 718Right-handed alpha
Helix 17
AB8
A
721 729Right-handed alpha
Helix 18
AB9
A
746 754Right-handed alpha
Helix 19
AC1
A
758 766Right-handed alpha
Helix 20
AC2
A
814 823Right-handed alpha
Helix 21
AC3
A
824 826Right-handed 310
Helix 22
AC4
A
827 833Right-handed alpha
Helix 23
AC5
A
833 847Right-handed alpha
Helix 24
AC6
A
852 862Right-handed alpha
Helix 25
AC7
A
894 897Right-handed 310
Helix 26
AC8
A
943 954Right-handed alpha
Helix 27
AC9
A
1000 1009Right-handed alpha
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There are 7 sheets in PDB entry 8ZCY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
672 675first strand
Strand 2
A
473 478parallel
Strand 3
A
5 11parallel
Strand 4
A
15 22anti-parallel
Strand 5
A
28 35anti-parallel
Strand 6
A
770 773parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 534first strand
Strand 2
A
539 540anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
553 557first strand
Strand 2
A
572 576anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
880 886first strand
Strand 2
A
799 805anti-parallel
Strand 3
A
789 793anti-parallel
Strand 4
A
904 906anti-parallel
Strand 5
A
891 892anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
922 929first strand
Strand 2
A
911 919anti-parallel
Strand 3
A
961 966anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
933 935first strand
Strand 2
A
940 942anti-parallel
Strand 3
A
1050 1051anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1016 1019first strand
Strand 2
A
991 995anti-parallel
Strand 3
A
977 986anti-parallel
Strand 4
A
971 974anti-parallel
Strand 5
A
1027 1032anti-parallel
Strand 6
A
1038 1041anti-parallel
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