Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZD0 entry

There are 5 chains in PDB entry 8ZD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 1053
B
 G 0 A 98
C
 A -2 G 12
C
 C 20 T 34
D
 C 0 T 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8ZD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 74Right-handed alpha
Helix 2
AA2
A
87 96Right-handed alpha
Helix 3
AA3
A
101 115Right-handed alpha
Helix 4
AA4
A
133 145Right-handed alpha
Helix 5
AA5
A
149 161Right-handed alpha
Helix 6
AA6
A
172 191Right-handed alpha
Helix 7
AA7
A
194 207Right-handed alpha
Helix 8
AA8
A
225 234Right-handed alpha
Helix 9
AA9
A
250 265Right-handed alpha
Helix 10
AB1
A
276 287Right-handed alpha
Helix 11
AB2
A
295 304Right-handed alpha
Helix 12
AB3
A
306 308Right-handed 310
Helix 13
AB4
A
326 336Right-handed alpha
Helix 14
AB5
A
338 343Right-handed alpha
Helix 15
AB6
A
344 358Right-handed alpha
Helix 16
AB7
A
360 370Right-handed alpha
Helix 17
AB8
A
376 384Right-handed alpha
Helix 18
AB9
A
396 410Right-handed alpha
Helix 19
AC1
A
413 421Right-handed alpha
Helix 20
AC2
A
438 444Right-handed alpha
Helix 21
AC3
A
447 469Right-handed alpha
Helix 22
AC4
A
650 668Right-handed alpha
Helix 23
AC5
A
677 688Right-handed alpha
Helix 24
AC6
A
693 697Right-handed 310
Helix 25
AC7
A
698 715Right-handed alpha
Helix 26
AC8
A
757 766Right-handed alpha
Helix 27
AC9
A
814 823Right-handed alpha
Helix 28
AD1
A
824 826Right-handed 310
Helix 29
AD2
A
827 833Right-handed alpha
Helix 30
AD3
A
833 847Right-handed alpha
Helix 31
AD4
A
852 862Right-handed alpha
Helix 32
AD5
A
894 897Right-handed 310
Helix 33
AD6
A
943 954Right-handed alpha
Helix 34
AD7
A
1000 1009Right-handed alpha
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There are 7 sheets in PDB entry 8ZD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
672 673first strand
Strand 2
A
473 474parallel
Strand 3
A
5 11parallel
Strand 4
A
15 22anti-parallel
Strand 5
A
28 35anti-parallel
Strand 6
A
770 773parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
310 311anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
321 322anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
880 886first strand
Strand 2
A
799 805anti-parallel
Strand 3
A
789 793anti-parallel
Strand 4
A
904 906anti-parallel
Strand 5
A
891 892anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
922 929first strand
Strand 2
A
911 919anti-parallel
Strand 3
A
961 966anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
933 935first strand
Strand 2
A
940 942anti-parallel
Strand 3
A
1050 1051anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1016 1019first strand
Strand 2
A
991 995anti-parallel
Strand 3
A
977 986anti-parallel
Strand 4
A
971 974anti-parallel
Strand 5
A
1027 1032anti-parallel
Strand 6
A
1038 1040anti-parallel
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