Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZD4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZD4 entry

There are 4 chains in PDB entry 8ZD4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 22	GLU 223
B	GLY 25	LYS 248
D	GLN 22	GLU 223
G	GLY 25	PRO 246

There are 12 helices in PDB entry 8ZD4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	102	106	Right-handed 310
Helix 2	AA2	A	219	223	Right-handed 310
Helix 3	AA3	B	104	108	Right-handed 310
Helix 4	AA4	B	159	165	Right-handed alpha
Helix 5	AA5	B	217	221	Right-handed 310
Helix 6	AA6	B	234	238	Right-handed 310
Helix 7	AA7	D	202	206	Right-handed 310
Helix 8	AA8	D	219	223	Right-handed 310
Helix 9	AA9	G	104	108	Right-handed 310
Helix 10	AB1	G	157	165	Right-handed alpha
Helix 11	AB2	G	219	221	Right-handed 310
Helix 12	AB3	G	234	238	Right-handed 310

There are 24 sheets in PDB entry 8ZD4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	25	first strand
Strand 2	A	41	46	anti-parallel
Strand 3	A	93	98	anti-parallel
Strand 4	A	83	88	anti-parallel
Strand 5	A	78	80	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	34	first strand
Strand 2	A	132	135	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	70	first strand
Strand 2	A	53	60	anti-parallel
Strand 3	A	111	115	anti-parallel
Strand 4	A	123	126	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	150	first strand
Strand 2	A	155	162	anti-parallel
Strand 3	A	192	196	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	172	first strand
Strand 2	A	207	212	anti-parallel
Strand 3	A	215	217	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	179	first strand
Strand 2	A	198	200	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	31	first strand
Strand 2	B	134	138	parallel
Strand 3	B	109	110	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	41	first strand
Strand 2	B	96	100	anti-parallel
Strand 3	B	86	89	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	77	first strand
Strand 2	B	66	69	anti-parallel
Strand 3	B	50	53	anti-parallel
Strand 4	B	113	117	anti-parallel
Strand 5	B	127	130	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	154	first strand
Strand 2	B	167	176	anti-parallel
Strand 3	B	208	216	anti-parallel
Strand 4	B	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	154	first strand
Strand 2	B	167	176	anti-parallel
Strand 3	B	208	216	anti-parallel
Strand 4	B	202	203	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	186	first strand
Strand 2	B	225	229	anti-parallel
Strand 3	B	240	244	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	25	first strand
Strand 2	D	39	46	anti-parallel
Strand 3	D	93	98	anti-parallel
Strand 4	D	83	88	anti-parallel
Strand 5	D	79	80	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	34	first strand
Strand 2	D	130	135	parallel
Strand 3	D	108	115	anti-parallel
Strand 4	D	53	59	anti-parallel
Strand 5	D	69	70	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	34	first strand
Strand 2	D	130	135	parallel
Strand 3	D	108	115	anti-parallel
Strand 4	D	123	126	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	150	first strand
Strand 2	D	155	162	anti-parallel
Strand 3	D	192	196	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	172	first strand
Strand 2	D	207	212	anti-parallel
Strand 3	D	215	217	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	179	first strand
Strand 2	D	198	199	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	32	first strand
Strand 2	G	134	139	parallel
Strand 3	G	109	117	anti-parallel
Strand 4	G	50	56	anti-parallel
Strand 5	G	62	69	anti-parallel
Strand 6	G	74	76	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	32	first strand
Strand 2	G	134	139	parallel
Strand 3	G	109	117	anti-parallel
Strand 4	G	127	130	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	40	first strand
Strand 2	G	95	100	anti-parallel
Strand 3	G	86	92	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	150	154	first strand
Strand 2	G	166	174	anti-parallel
Strand 3	G	208	217	anti-parallel
Strand 4	G	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	150	154	first strand
Strand 2	G	166	174	anti-parallel
Strand 3	G	208	217	anti-parallel
Strand 4	G	202	203	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	182	186	first strand
Strand 2	G	225	230	anti-parallel
Strand 3	G	240	244	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZD4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZD4