Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZD6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZD6 entry

There are 12 chains in PDB entry 8ZD6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 153
B	GLU 1	LEU 162
C	ASP 1	ALA 157
D	MET 1	GLN 153
E	GLN 3	GLU 166
F	ASP 1	ALA 157
G	MET 1	ALA 152
H	VAL 2	ALA 167
I	ASP 1	ALA 157
J	MET 1	ALA 152
K	GLN 3	ILE 161
L	ASP 1	ALA 157

There are 42 helices in PDB entry 8ZD6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	61	Right-handed 310
Helix 2	AA2	A	107	111	Right-handed 310
Helix 3	AA3	B	28	32	Right-handed 310
Helix 4	AA4	B	62	65	Right-handed 310
Helix 5	AA5	B	87	91	Right-handed 310
Helix 6	AA6	B	119	126	Right-handed alpha
Helix 7	AA7	B	128	138	Right-handed alpha
Helix 8	AA8	B	138	162	Right-handed alpha
Helix 9	AA9	C	79	83	Right-handed 310
Helix 10	AB1	C	124	128	Right-handed alpha
Helix 11	AB2	C	128	156	Right-handed alpha
Helix 12	AB3	D	57	61	Right-handed 310
Helix 13	AB4	D	107	111	Right-handed 310
Helix 14	AB5	D	132	136	Right-handed 310
Helix 15	AB6	E	28	32	Right-handed 310
Helix 16	AB7	E	87	91	Right-handed 310
Helix 17	AB8	E	121	126	Right-handed alpha
Helix 18	AB9	E	128	138	Right-handed alpha
Helix 19	AC1	E	138	166	Right-handed alpha
Helix 20	AC2	F	79	83	Right-handed 310
Helix 21	AC3	F	119	128	Right-handed alpha
Helix 22	AC4	F	128	156	Right-handed alpha
Helix 23	AC5	G	57	61	Right-handed 310
Helix 24	AC6	G	107	111	Right-handed 310
Helix 25	AC7	H	28	32	Right-handed 310
Helix 26	AC8	H	87	91	Right-handed 310
Helix 27	AC9	H	121	125	Right-handed alpha
Helix 28	AD1	H	134	138	Right-handed alpha
Helix 29	AD2	H	138	167	Right-handed alpha
Helix 30	AD3	I	79	83	Right-handed 310
Helix 31	AD4	I	119	128	Right-handed alpha
Helix 32	AD5	I	128	156	Right-handed alpha
Helix 33	AD6	J	57	61	Right-handed 310
Helix 34	AD7	J	107	111	Right-handed 310
Helix 35	AD8	J	132	136	Right-handed 310
Helix 36	AD9	K	28	32	Right-handed 310
Helix 37	AE1	K	87	91	Right-handed 310
Helix 38	AE2	K	128	138	Right-handed alpha
Helix 39	AE3	K	138	159	Right-handed alpha
Helix 40	AE4	L	79	83	Right-handed 310
Helix 41	AE5	L	124	128	Right-handed alpha
Helix 42	AE6	L	128	156	Right-handed alpha

There are 27 sheets in PDB entry 8ZD6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	9	first strand
Strand 2	A	16	24	anti-parallel
Strand 3	A	29	36	anti-parallel
Strand 4	A	95	101	anti-parallel
Strand 5	A	83	89	anti-parallel
Strand 6	A	41	48	anti-parallel
Strand 7	A	116	120	anti-parallel
Strand 8	A	143	151	anti-parallel
Strand 9	A	2	9	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	111	115	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	33	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	111	115	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	106	107	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	62	67	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	84	90	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	45	49	anti-parallel
Strand 6	C	53	54	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	84	90	anti-parallel
Strand 4	C	97	98	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	9	first strand
Strand 2	D	16	24	anti-parallel
Strand 3	D	29	36	anti-parallel
Strand 4	D	95	101	anti-parallel
Strand 5	D	83	89	anti-parallel
Strand 6	D	41	48	anti-parallel
Strand 7	D	116	120	anti-parallel
Strand 8	D	143	151	anti-parallel
Strand 9	D	2	9	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	18	24	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	108	115	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	49	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	97	98	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	9	first strand
Strand 2	G	16	24	anti-parallel
Strand 3	G	29	36	anti-parallel
Strand 4	G	95	101	anti-parallel
Strand 5	G	83	89	anti-parallel
Strand 6	G	41	48	anti-parallel
Strand 7	G	116	120	anti-parallel
Strand 8	G	143	151	anti-parallel
Strand 9	G	2	9	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	69	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	111	115	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	111	115	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	106	107	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	62	67	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	102	106	parallel
Strand 3	I	84	90	anti-parallel
Strand 4	I	33	38	anti-parallel
Strand 5	I	45	49	anti-parallel
Strand 6	I	53	54	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	102	106	parallel
Strand 3	I	84	90	anti-parallel
Strand 4	I	97	98	anti-parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2	9	first strand
Strand 2	J	16	24	anti-parallel
Strand 3	J	29	36	anti-parallel
Strand 4	J	95	101	anti-parallel
Strand 5	J	83	89	anti-parallel
Strand 6	J	41	48	anti-parallel
Strand 7	J	116	120	anti-parallel
Strand 8	J	143	151	anti-parallel
Strand 9	J	2	9	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	6	first strand
Strand 2	K	18	24	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	111	115	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	33	39	anti-parallel
Strand 5	K	45	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	111	115	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	106	107	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZD6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZD6