Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZDA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZDA entry

There are 6 chains in PDB entry 8ZDA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 1053
B
 G 0 U 97
C
 A -2 G 12
D
 A -24 A -16
D
 C 0 T 14
E
 C 20 T 36
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8ZDA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 74Right-handed alpha
Helix 2
AA2
A
87 96Right-handed alpha
Helix 3
AA3
A
101 115Right-handed alpha
Helix 4
AA4
A
149 161Right-handed alpha
Helix 5
AA5
A
172 191Right-handed alpha
Helix 6
AA6
A
194 207Right-handed alpha
Helix 7
AA7
A
225 234Right-handed alpha
Helix 8
AA8
A
250 265Right-handed alpha
Helix 9
AA9
A
276 287Right-handed alpha
Helix 10
AB1
A
295 304Right-handed alpha
Helix 11
AB2
A
306 308Right-handed 310
Helix 12
AB3
A
326 336Right-handed alpha
Helix 13
AB4
A
338 343Right-handed alpha
Helix 14
AB5
A
344 358Right-handed alpha
Helix 15
AB6
A
360 370Right-handed alpha
Helix 16
AB7
A
376 384Right-handed alpha
Helix 17
AB8
A
396 410Right-handed alpha
Helix 18
AB9
A
413 422Right-handed alpha
Helix 19
AC1
A
438 445Right-handed alpha
Helix 20
AC2
A
447 469Right-handed alpha
Helix 21
AC3
A
484 513Right-handed alpha
Helix 22
AC4
A
517 530Right-handed alpha
Helix 23
AC5
A
542 549Right-handed alpha
Helix 24
AC6
A
568 570Right-handed 310
Helix 25
AC7
A
577 584Right-handed alpha
Helix 26
AC8
A
587 593Right-handed alpha
Helix 27
AC9
A
600 613Right-handed alpha
Helix 28
AD1
A
619 627Right-handed alpha
Helix 29
AD2
A
635 640Right-handed alpha
Helix 30
AD3
A
649 668Right-handed alpha
Helix 31
AD4
A
677 688Right-handed alpha
Helix 32
AD5
A
698 717Right-handed alpha
Helix 33
AD6
A
757 766Right-handed alpha
Helix 34
AD7
A
814 823Right-handed alpha
Helix 35
AD8
A
824 826Right-handed 310
Helix 36
AD9
A
827 833Right-handed alpha
Helix 37
AE1
A
833 847Right-handed alpha
Helix 38
AE2
A
852 862Right-handed alpha
Helix 39
AE3
A
894 897Right-handed 310
Helix 40
AE4
A
943 954Right-handed alpha
Helix 41
AE5
A
1000 1009Right-handed alpha
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There are 8 sheets in PDB entry 8ZDA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
672 673first strand
Strand 2
A
473 474parallel
Strand 3
A
5 11parallel
Strand 4
A
15 22anti-parallel
Strand 5
A
28 35anti-parallel
Strand 6
A
770 773parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
310 311anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
321 322anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
553 557first strand
Strand 2
A
572 576anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
880 886first strand
Strand 2
A
799 805anti-parallel
Strand 3
A
789 793anti-parallel
Strand 4
A
904 906anti-parallel
Strand 5
A
891 892anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
922 929first strand
Strand 2
A
911 919anti-parallel
Strand 3
A
961 966anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
933 935first strand
Strand 2
A
940 942anti-parallel
Strand 3
A
1050 1051anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1016 1019first strand
Strand 2
A
991 995anti-parallel
Strand 3
A
977 986anti-parallel
Strand 4
A
971 974anti-parallel
Strand 5
A
1027 1032anti-parallel
Strand 6
A
1038 1040anti-parallel
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