Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZDE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZDE entry

There are 12 chains in PDB entry 8ZDE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 8	GLU 146
B	MET 1	ARG 147
C	ASP 9	GLU 146
D	TYR 8	LYS 145
E	ASP 9	LYS 145
F	ASP 9	VAL 144
G	A 1	T 22
H	A 1	T 22
I	A 1	T 22
J	A 1	T 22
K	A 1	T 22
L	A 1	T 22

There are 45 helices in PDB entry 8ZDE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	32	Right-handed alpha
Helix 2	AA2	A	38	52	Right-handed alpha
Helix 3	AA3	A	56	63	Right-handed alpha
Helix 4	AA4	A	66	81	Right-handed alpha
Helix 5	AA5	A	100	120	Right-handed alpha
Helix 6	AA6	A	126	145	Right-handed alpha
Helix 7	AA7	B	9	32	Right-handed alpha
Helix 8	AA8	B	38	52	Right-handed alpha
Helix 9	AA9	B	56	64	Right-handed alpha
Helix 10	AB1	B	66	81	Right-handed alpha
Helix 11	AB2	B	100	110	Right-handed alpha
Helix 12	AB3	B	110	120	Right-handed alpha
Helix 13	AB4	B	127	145	Right-handed alpha
Helix 14	AB5	C	10	34	Right-handed alpha
Helix 15	AB6	C	38	52	Right-handed alpha
Helix 16	AB7	C	56	64	Right-handed alpha
Helix 17	AB8	C	66	81	Right-handed alpha
Helix 18	AB9	C	100	110	Right-handed alpha
Helix 19	AC1	C	110	121	Right-handed alpha
Helix 20	AC2	C	126	145	Right-handed alpha
Helix 21	AC3	D	9	33	Right-handed alpha
Helix 22	AC4	D	38	52	Right-handed alpha
Helix 23	AC5	D	56	64	Right-handed alpha
Helix 24	AC6	D	66	81	Right-handed alpha
Helix 25	AC7	D	88	92	Right-handed 310
Helix 26	AC8	D	100	110	Right-handed alpha
Helix 27	AC9	D	110	120	Right-handed alpha
Helix 28	AD1	D	121	123	Right-handed 310
Helix 29	AD2	D	126	145	Right-handed alpha
Helix 30	AD3	E	10	32	Right-handed alpha
Helix 31	AD4	E	39	52	Right-handed alpha
Helix 32	AD5	E	56	64	Right-handed alpha
Helix 33	AD6	E	66	80	Right-handed alpha
Helix 34	AD7	E	100	109	Right-handed alpha
Helix 35	AD8	E	115	120	Right-handed alpha
Helix 36	AD9	E	127	145	Right-handed alpha
Helix 37	AE1	F	10	32	Right-handed alpha
Helix 38	AE2	F	38	51	Right-handed alpha
Helix 39	AE3	F	55	64	Right-handed alpha
Helix 40	AE4	F	66	79	Right-handed alpha
Helix 41	AE5	F	100	108	Right-handed alpha
Helix 42	AE6	F	110	120	Right-handed alpha
Helix 43	AE7	F	121	123	Right-handed 310
Helix 44	AE8	F	128	138	Right-handed alpha
Helix 45	AE9	F	139	144	Right-handed 310

There are 6 sheets in PDB entry 8ZDE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	95	99	anti-parallel
Strand 3	A	83	87	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	C	83	88	parallel
Strand 3	C	96	99	anti-parallel
Strand 4	C	54	55	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	96	99	anti-parallel
Strand 3	B	83	86	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	55	first strand
Strand 2	D	96	99	anti-parallel
Strand 3	D	83	86	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	55	first strand
Strand 2	E	91	99	anti-parallel
Strand 3	E	83	88	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	84	first strand
Strand 2	F	98	99	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZDE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZDE